en
Contributors are those that engage in discussions in the context of SIO (in alphabetical order):
sivaram arabandi
christopher baker
joachim baran
jerven bolleman
matthew brush
alison callahan
leonid chepelev
kevin cohen
melanie courtot
geraint duck
laura furlong
elisa kendall
tatsuya kushida
luke mccarthy
jim mccusker
jose miguel cruz-toledo
chris mungall
robert hoehndorf
simon jupp
jin-dong kim
dana klassen
thomas luetteke
james malone
chris mungall
david osumi-sutherland
tazro ohta
nuria queralt
stephen reed
alexandre riazanov
matthias samwald
robert stevens
mark wilkinson
karin verspoor
natalia villanueva-rosales
2012-10-26
Michel Dumontier
2013-10-23
http://orcid.org/0000-0003-4727-9435
The Bibliographic Ontology describes
bibliographic things on the semantic Web in RDF. This ontology can be
used as a citation ontology, as a document classification ontology, or
simply as a way to describe any kind of document in RDF. It has been
inspired by many existing document description metadata formats, and
can be used as a common ground for converting other bibliographic data
sources.
The semanticscience integrated ontology (SIO) provides a simple, integrated ontology (types, relations) for objects, processes and their attributes.
This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.
website: http://semanticscience.org
email: sio-ontology@googlegroups.com
mailing list: http://groups.google.com/group/sio-ontology
2010-03-29
free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/4.0/].
Semanticscience Integrated Ontology (SIO)
The Bibliographic Ontology
http://www.jbiomedsem.com/content/5/1/14
sio
http://semanticscience.org/resource/
general class inclusion axioms:
'is part of' some 'physical entity' subClassOf 'is located in' some 'physical entity'
role chains:
'has capability' o 'is realized in' -> 'is participant in'
A materials ontology to support data publication involving nanomaterials and metamaterials.
BIBO
Materialsmine Ontology
Nanopub
SIO
http://sio.semanticscience.org
1.53
http://purl.org/ontology/bibo/1.3/
sio-subset-labels.owl
Used to link an agent (a person) to an event (a conference, an hearing, etc.)
Used to relate an event such as a conference to the geographical place where it happens, for example Paris.
Used to link an event such as a conference to an outcome (a product) of that event, for example, an article, a proceeding, etc.
Used to link big events with smaller events such as workshops that happen in the context of a conference.
Used to describe the timing of an event. For example, when a conference starts and stops.
<dcterms:format>
<dcterms:MediaTypeOrExtent>
<rdf:value>text/html</rdf:value>
<rdfs:label>HTML</rdfs:label>
</dcterms:MediaTypeOrExtent>
</dcterms:format>
Used to describe the format of a bibliographic resource.
Used to relate a reference citation to a bibliographic resource.
Used to link a bibliographic resource to the language used to express it.
Used to link a bibliographic item to its publisher.
Used to describe the subject of a bibliographic resource.
A legal decision that affirms a ruling.
http://purl.org/ontology/bibo/
Critical or explanatory note for a Document.
http://purl.org/ontology/bibo/
annotates
stable
An ordered list of authors. Normally, this list is seen as a priority list that order authors by importance.
http://purl.org/ontology/bibo/
list of authors
stable
Relates a document to another document that cites the
first document.
http://purl.org/ontology/bibo/
cited by
unstable
Relates a document to another document that is cited
by the first document as reference, comment, review, quotation or for
another purpose.
http://purl.org/ontology/bibo/
cites
unstable
An ordered list of contributors. Normally, this list is seen as a priority list that order contributors by importance.
http://purl.org/ontology/bibo/
list of contributors
stable
A court associated with a legal document; for example, that which issues a decision.
http://purl.org/ontology/bibo/
court
unstable
The thesis degree.
http://purl.org/ontology/bibo/
degree
unstable
We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen.
A Film director.
http://purl.org/ontology/bibo/
director
stable
Distributor of a document or a collection of documents.
http://purl.org/ontology/bibo/
distributor
stable
A person having managerial and sometimes policy-making responsibility for the editorial part of a publishing firm or of a newspaper, magazine, or other publication.
http://purl.org/ontology/bibo/
editor
stable
An ordered list of editors. Normally, this list is seen as a priority list that order editors by importance.
http://purl.org/ontology/bibo/
list of editors
stable
An agent that is interviewed by another agent.
http://purl.org/ontology/bibo/
interviewee
stable
An agent that interview another agent.
http://purl.org/ontology/bibo/
interviewer
stable
An entity responsible for issuing often informally published documents such as press releases, reports, etc.
http://purl.org/ontology/bibo/
issuer
unstable
The organizer of an event; includes conference organizers, but also government agencies or other bodies that are responsible for conducting hearings.
http://purl.org/ontology/bibo/
organizer
unstable
Owner of a document or a collection of documents.
http://purl.org/ontology/bibo/
owner
unstable
http://purl.org/ontology/bibo/
performer
stable
Relates a document to an event; for example, a paper to a conference.
http://purl.org/ontology/bibo/
presented at
unstable
Relates an event to associated documents; for example, conference to a paper.
http://purl.org/ontology/bibo/
presents
unstable
Producer of a document or a collection of documents.
http://purl.org/ontology/bibo/
producer
stable
An agent that receives a communication document.
http://purl.org/ontology/bibo/
recipient
stable
The resource in which another resource is reproduced.
http://purl.org/ontology/bibo/
unstable
A legal decision that reverses a ruling.
http://purl.org/ontology/bibo/
Relates a review document to a reviewed thing (resource, item, etc.).
http://purl.org/ontology/bibo/
review of
stable
The publication status of (typically academic) content.
http://purl.org/ontology/bibo/
status
stable
We are not defining, using an enumeration, the range of the bibo:status to the defined list of bibo:DocumentStatus. We won't do it because we want people to be able to define new status if needed by some special usecases. Creating such an enumeration would restrict this to happen.
A legal decision on appeal that takes action on a case (affirming it, reversing it, etc.).
http://purl.org/ontology/bibo/
Relates a document to some transcribed original.
http://purl.org/ontology/bibo/
transcript of
unstable
Relates a translated document to the original document.
http://purl.org/ontology/bibo/
translation of
stable
A person who translates written document from one language to another.
http://purl.org/ontology/bibo/
translator
stable
affects
cites is a relation to refer to by way of example, authority or proof.
cites
A contains B iff the spatial region occupied by A has the spatial region occupied by B as a part, and B is not part of A. [T]
contains
denotes is a relation between an entity and what it is a sign or indication of, or what specifically means.
denotes
the symbol '%' denotes a proportion in relation to a whole.
a derives to b if and only if a or some part thereof is consumed in the formation of b.
derives into
describes is a relation between one entity and another entity that it provides a description (detailed account of).
core
describes
A relation between two objects, in which the first object contains information that is used to produce the second object.
encodes
an open reading frame encodes a protein (it contains information that specifies the amino acid composition and topology)
exists at is a relation between an entity and a time measurement.
core
exists at
has agent is a relation between a process and an entity, where the entity is present throughout the process and is a causal participant in the process.
OBO_REL:has_agent
core
sadi
has agent
is annotated with
was annotated with
has annotation is a relation between an entity and some textual anntotation.
has annotation
document x is annotated with the keywords 'ontology','semantic web'
has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type.
core
has attribute
has basis is a relation between a realizable entity and the quality that forms the basis for it.
has basis
the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization).
has boundary is a mereological relation between a whole and boundary located at its periphery.
has boundary
the surface of an apple is a 2D boundary of the apple.
has capability is a relation between an entity and the capability that it bears.
has capability
SIO has the capability to semantically integrate data.
has component part is a relation between a whole and a component part where the component is instrinsic to the whole, and loss of the part would change the kind that it is.
has component part
a human has blood as a component part
A has concretization B iff A is an informational entity and B is the a quality of some material entity.
has concretization
is created by
was created by
has creator is a relation between an entity and that which created it.
dc:creator
has creator
the iPhone was created by Apple Inc
has data item is a relation between a dataset and any described / referrenced entity.
core
has data item
has direct part is a relation to specify a part at a particular level of granularity
has direct part
a car has an engine as a direct part
has disposition is the relation between an entity and a disposition that it bears.
has disposition
has end time
has evidence is a relation between a proposition and something that demonstrates the truth of the assertion.
has evidence
has expression
the story 'war of worlds' is expressed as every language edition of the book 'war of the worlds'
has first part is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
has first part
has frequency is a relation that specifies the occurence of an object or event
has frequency
has function is the relation between an entity and a function that is ascribed to it.
has function
a relation between an entity and an identifier.
has identifier
has implementation is a relation between a specification and an implementation that conforms to it.
has implementation
has input is a relation between a process and an entity, where the entity is present at the beginning of the process.
core
sadi
has input
has last part is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
has last part
has measurement value is a relation between a quality/realizable and a measurement value.
core
has measurement value
has member is a mereological relation between a collection and an item.
core
has member
a collection of cars has as a car as a member
has ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
has ordered part
has output is a relation between an process and an entity, where the entity is present at the end of the process.
core
sadi
has output
has parameter is a relation between a process and an information content entity which modulates the behaviour of some participant.
sadi
has parameter
has part is a transitive, reflexive and antisymmetric relation between a whole and itself or a whole and its part.
has part
a collection of cars has as a car as a part;a car has an engine as a part; a car has a piston as a part;
has participant is a relation that describes the participation of the object in the (processual) subject.
OBO_REL:has_participant
core
has participant
has phenotype is a relation between an object and an observable/measurable characteristic.
has phenotype
has product is a relation between an process and an entity, where a new entity exists at the end of the process.
sadi
has product
has proper part is an antisymmetric, irreflexive (normally transitive) relation between a whole and a distinct part.
has proper part
a car has an engine as a proper part; a car has a piston as a proper part;
has property is a relation between an entity and the quality, capability or role that it and it alone bears.
has property
michel's hair has the quality of being brown in colour.
is provided by is a relation between an entity and the entity that provides it.
dc:source
has provider
has quality is a relation between an entity and the quality that it bears.
has quality
has realizable property
has role is a relation between an entity and a role that it bears.
has role
has source is a relation between an entity and another entity from which it stems from.
has source
has start time
has substrate is a relation between a process and an object where the object is destroyed by its participation in the process.
has substrate
has target is a relation between a process and an entity, where the entity is present at the beginning of the process and undergoes a change or transformation in the process.
has target
has time boundary
has trigger is a relation between a realizable and the factor that causes it to be realized.
has trigger
has unique identifier is an inverse functional relation between an entity and an identifier that uniquely identifies it.
has unique identifier
has unit is a relation between a quantity and the unit it is a multiple of.
core
has unit
a immediately derives into b if and only if a or some significant part thereof is consumed in the formation of b and there are no identifiable intermediate entities between a and b.
immediately derives into
A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes.
immediately precedes
A temporal relation in which an entity mainstains identity from one state to another.
immediately transforms into
a in relation from b is a comparative relation in a is the object of reference in a relation with b.
in relation from
in relation to is a comparative relation to indicate that the instance of the class holding the relation exists in relation to another entity.
core
in relation to
is about is a relation between an information content entity and the entity that its primary subject.
is about
A is adjacent to B iff there is a small, but non-zero distance between A and B
OBO_REL:adjacent_to
core
nlp
is adjacent to
is affected by
is agent in is a relation between an entity and a process, where the entity is present throughout the process, no permanent material change occurs, and is a causal participant in the process.
sadi
is agent in
hexokinase is an agent in the conversion of glucose to glucose-6-phosphate
is alternate of relates two specialized instances.
http://www.w3.org/ns/prov#alternateOf
is alternate of
two weather forecasts for the city of London produced at different times or by different organizations (etc) are alternates of each other, and instances of / specializations of forecasts for the city of London.
is annotation of is a relation between some textual entity and the entity that it annotates.
is annotation of
x is associated with y when x and y are logically or statistically related to one another.
is associated with
is attribute of is a relation that associates an attribute with an entity where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type.
is attribute of
is base for is a relation between a quality and the realizable entity that it is the basis for.
is base for
the solubility of salt (the disposition) is based on the molecular structure of NaCl (the quality) that allows the polarized water-molecules (the trigger) to break the ion bonds (the realization).
is boundary of is a mereological relation between a boundary located at the periphery of a whole.
is boundary of
http://www.w3.org/2004/02/skos/core#broadMatch
is broad match to
http://www.w3.org/2004/02/skos/core#narrower
is broader than
A is broader than B (t) iff for A is broader than B.
http://www.w3.org/2004/02/skos/core#narrowerTransitive
is broader than (t)
is capability of is a relation between a capability and the entity that bears it.
is capability of
a is causally related from b iff there is a causal chain of events from b to a
core
is causally related from
a is causally related to b iff there is a causal chain of events from a to b
is causally related to
A transitive, symmetric, temporal relation in which one entity is causally related with another non-identical entity.
core
is causally related with
is cited by is a relation from an object that is referred to by way of example, authority or proof.
is cited by
http://www.w3.org/2004/02/skos/core#closeMatch
is close match to
is comparable to is a relation between two entities that share at least one feature whose value can be compared.
core
is comparable to
is component part of is a relation between a component and a whole, where the component is instrinsic to the whole, and loss of the part would change the kind that the whole is.
core
is component part of
A is concretization of B iff A is a quality of a material entity and B is an informational entity.
is concretization of
interacts with
A is connected to B iff there exists a fiat, material or temporal path between A and B. [S][T]
core
nlp
is connected to
A is contained in B iff the spatial region occupied by A is part of the spatial region occupied by B and A is not part of B. [T]
OBO_REL:contained_in
core
is contained in
x is correlated with y when x holds a statistical relationship with y
is correlated with
is covalently connected to is a relation between an atom and another atom.
is covalently connected to
is covalently connected to (transitive)
is created by
is creator of is a relation between a creator and an entity..
is creator of
'is data item in' is a relation between an entity that is described or referenced in a dataset.
core
is data item in
is denoted by
A transitive temporal relation in which one entity was materially formed from another non-identical entity.
OBO_REL:derives_from
core
is derived from
is described by is a relation between one entity and another entity that provides a description (detailed account) of it.
is described by
is direct part of is a relation between a specific part (at some level of granularity) and its whole.
core
is direct part of
is directly after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity, and the entities are adjacent to one another.
is directly after
is directly before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity, and the entities are adjacent to one another.
is directly before
A is directly connected to B iff there exists a path direclty between A and B.
is directly connected to
is disposition of is a relation between a disposition and the entity that it is a property of.
is disposition of
has disputing evidence is a relation between a proposition and something that disputes (does not directly support) the truth of the assertion.
is disputed by
is disputing evidence for
is dissimilar to is a relation between two entities in which one is considered dissimilar to the other based on some criteria.
is dissimilar to
A relation between two objects, in which the first object is produced from the information contained in the second object.
is encoded by
is end time of
is equal to is a comparison relation between two quantities whose value are exactly the same.
is equal to
is evidence for
http://www.w3.org/2004/02/skos/core#exactMatch
is exact match to
is expression of is a relation between more concrete expression of some conceptualization.
is expression of
every language edition of 'war of the worlds' are expressions of the story of 'war of the worlds'
is first part of is a proper part relation in which the part is the first of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
is first part of
is frequency of is a relation between a temporal unit and an object or event
is frequency of
is function of is a relation between a function and an entity that it is a property of.
is function of
is generalization of is a relation between a more general instance (in terms of spatial/temporal localization & other attributres) than the other.
is generalization of
A is generically related with B iff A is an abstract entity or an information content entity and B is a information content entity or a physical entity, respectively.
is generically related with
is greater than to is a comparison relation between two quantities in which the first has a value larger than the second.
is greater than
is greater than or equal to is a comparison relation between two quantities in which the first has a value larger or equal to the second.
is greater than or equal to
a relation between two entities which indicates their common ancestry.
is homologous to
is identical to is a relation between two objects that are conceptually the same notwithstanding provenance or other non-intrinsic attributes.
is identical to
identifies
a relation between an identifier and an entity.
is identifier for
A non-transitive temporal relation in which one entity is immediately derived from a non-identical entity such that there are no intermediate entities between them.
is immediately derived from
A non-transitive temporal relation in which one process is immediately preceded by another process, such that there is no interval of time between the two processes.
is immediately preceded by
A temporal relation in which an entity mainstains identity from one state to another.
is immediately transformed from
is implementation of is a relation between an information entity and a specification that it conforms to.
is implementation of
is inequal to is a comparison relation between two quantities whose value are not the same.
is inequal to
is input in is a relation between an entity and a process, where the entity is present at the beginning of the process.
sadi
is input in
glucose and ATP are inputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
is last part of is a proper part relation in which the part is the last of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
is last part of
is lesser than to is a comparison relation between two quantities in which the first has a value smaller than the second.
is lesser than
is greater than to is a comparison relation between two quantities in which the first has a value smaller or equal to the second.
is lesser than or equal to
A is located in B iff the spatialtemporial region occupied by A is part of the spatialtemporal region occupied by B. [T][R]
OBO_REL:located_in
core
is located in
A parasite in the interior of a person's intestine is located in their intestinal lumen.
A is location of B iff the spatialtemporal region occupied by A has the spatialtemporal region occupied by B as a part. [T][R]
nlp+
is location of
is manifestation of
is manifested as is a relation between an expression and its manifestations.
is manifested as
the english language version of 'war of the worlds' is manifested as a collection of english language versions of the book.
A is match to B iff A and B are terms with similar (related, broad, close, exact) meanings
http://www.w3.org/2004/02/skos/core#relatedMatch
is match to
is measurement value of is a relation between a value and the entity that it is a measurement of.
is measurement value of
is member of is a mereological relation between a item and a collection.
is member of
is model of is a relation between a model (an artifact) and the entity it purports to represent.
is model of
the architect builds a model that represents the building she envisions.
is modelled by
a is mutual capability of b if and only if the realization of capability a necessarily causes the realization of capability b.
is mutual capability of
a is mutual disposition of b if and only if the realization of the disposition a necessarily causes the realization of the disposition b.
is mutual disposition of
a is mutual role of b if and only if the realization of role a necessarily causes the realization of role b.
is mutual role of
a is mutually related to b if and only if the realization of the relation of a necessarily causes the realization of a relation to b.
is mutually related to
A is narrower than B iff the meaning of term A is narrower in scope than the meaning of term B
http://www.w3.org/2004/02/skos/core#broader
is narrower than
A is narrower than B (t) iff for A is narrower than B.
http://www.w3.org/2004/02/skos/core#broaderTransitive
is narrower than (t)
is numerically comparable to is a comparison relation between two quantities whose datatype value can be compared.
is numerically comparable to
is opposite to is a relation between two entities in which one is diametrically opposed to the other.
is opposite to
hot is the opposite of cold; left is opposite of right
is ordered part of is a proper part relation in which the part is one of a set of linearly ordered parts resulting from the projection of the whole on a linear coordinate system.
is ordered part of
is orthologous to is a relation between two biological entities that share a common ancestor and occur in different species.
is orthologous to
is output of is a relation between an entity and a process, where the entity is present at the end of the process.
sadi
is output of
glucose-6-phosphate and ADP are outputs in the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
is paralogous to is a relation between two entities which indicates their common ancestry as a result of a gene duplication.
is paralogous to
is parameter in is a relation between a data item and some data transformation process.
is parameter in
is part of is a transitive, reflexive and anti-symmetric mereological relation between a whole and itself or a part and its whole.
OBO_REL:part_of
core
is part of
is participant in is a relation that describes the participation of the subject in the (processual) object.
is participant in
a car is a participant in a car race; glucose is a participant in glycolysis
is phenotype of is a relation between an observable/measurable characteristic and an object.
is phenotype of
is positionally after is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically greater than the projection of the position of the second entity.
is positionally after
is positionally before is a relation between entities placed on a dimensional axis in which the projection of the position of the first entity is numerically less than the projection of the position of the second entity.
is positionally before
OBO_REL:preceded_by
is preceded by
A is prior version of B iff A is a variant of B and B derives from A.
is prior version of
is product of is a relation between an entity and a process, where the entity is present at the end of the process as a result of a transformation in the process target.
sadi
is product of
glucose-6-phosphate is the product of the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
is proper part of is an asymmetric, irreflexive (normally transitive) relation between a part and its distinct whole.
OBO_REL:proper_part_of
core
is proper part of
is property of is a relation betweena quality, capability or role and the entity that it and it alone bears.
is property of
is provider of is a relation between a source and the entity it makes available.
is provider of
is quality of is a relation between a quality and the entity that it is a property of.
is quality of
is realizable property of
is realized in
the role of a patient is realized in medical examination
is reference for is a relation between a document that provides information about an entity.
is referenced by
A is referred to by B iff B is an informational entity that makes reference to A.
is referred to by
has evidence is a relation between a proposition and something that refutes (is incompatible with) the truth of the assertion.
is refuted by
is refuting evidence for
is regulated by
A is related to B iff there is some relation between A and B.
'is related to' is the top level relation in SIO
core
relations+
is related to
is represented by: a relation between an entity and some symbol.
is represented by
is result of
is role of is a relation between a role and the entity that it is a property of.
is role of
is satisfied by
is similar to is a relation between two entities that share one or more features.
is similar to
is source of is a relation between a source of information about some entity.
is source of
A is spatiotemporally related to B iff A is in the spatial or temporal vicinity of B
core
is spatiotemporally related to
is specialization of is a relation between a more specific instance (in terms of spatial/temporal localization & other attributres) than the other.
http://www.w3.org/ns/prov#specializationOf
is specialization of
a weather forecast for the city of London produced at a specific time is a specialization of a weather forecast for the city of London.
a relation between a product and the information content entity that specifies it.
is specified by
is start time of
is subject of
A is subsequent version of B iff A is a variant of B and A derives from B.
is subsequent version of
is supported by is a relation between a proposition and something that supports the truth of the assertion.
is supported by
is supporting evidence for
A 'is surrounded by' B iff the A 'is contained by' B and A 'is adjacent to' B or A 'is directly connected to' B.
is surrounded by
is target in is a relation between an entity and a process, where the entity is present at the beginning of the process and undergoes a change or transformation in the process.
is target in
glucose is a target in the hexokinase-mediated conversion of glucose to glucose-6-phosphate.
is time boundary of
is transcribed from
a relation between two information content entities in which one is transcribed into (an exact or similar kind) another through some process.
is transcribed into
DNA is transcribed into RNA
A transitive temporal relation in which an entity mainstains identity from one state to another.
is transformed from
not implemented in standard distribution
ovopub
is transitively related to
is translated from
is translated into
RNA is translated into Protein
a relation between two information content entities in which one is translated into (a completely different kind of entity) another through some process.
is trigger for
is unique identifier for is a relation between an identifier and an entity that it uniquely identifies
is unique identifier for
is unit of is a relation between a unit and a quantity that it is a multiple of.
is unit of
is variant of: a relationship indicating that two entities are different (by some measure), but either achieve the same objectives in different ways or are permutations of one another (temporal, logical or otherwise)
core
is variant of
is version of is a relation that holds between any two versions in which one is a subsequent or alternate version of (through a branch).
is version of
is weakly interacting with
is weakly interacting with is a symmetric relation between two molecular entities (or any part thereof) that are interacting through some weak force (van der waals, hydrogen bonds, electrostatic interactions)
is weakly interacting with (transitive)
a relation between two entities which indicates their common ancestry but due to horizontal gene transfer.
is xenologous to
measured at is a relation between a measurement value and the time measurement.
core
measured at
x negatively regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an reduced effect on the frequency, rate or extent of y
negatively regulates
A overlaps with B iff there is some C that is part of both A and B. [S][R]
overlaps with
x positively regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an effect that increases the frequency, rate or extent of y
positively regulates
A transitive, temporal relation in which one process precedes (has occured earlier than) another process.
core
precedes
realizes is a relation between a process and a realizable entity (role, function, disposition).
core
realizes
mentions
references is a relation between one entity and the entity that it makes reference to by name, but is not described by it.
core
references
refers to is a relation between one entity and the entity that it makes reference to.
core
nlp+
refers to
x regulates y if and only if x is a process and y is either a process or a quality, and the progression of x exerts an effect on the frequency, rate or extent of y
regulates
a represents b when a serves as a sign, symbol or model of b.
core
represents
results in
satisfies is a relation between an entity and the specification or objective that it conforms to.
satisfies
A relation between an information content entity and a product that it (directly/indirectly) specifies
specifies
A 'surrounds' B iff the A 'contains' B and A 'is adjacent to' B or A 'is directly connected to' B.
surrounds
A transitive temporal relation in which an entity mainstains identity from one state to another.
transforms into
Used to describe the content of a bibo:Document and othr bibliographic resouces.
We suggest to use this property instead of the deprecated "bibo:content" one.
Used to link an agent, related to bibliographic things, to a place where it is based near: can be a city, a monument, a building, etc.
Used to link an agent with an image that depict it.
Used to describe the creation date of a bibliographic item
Use to link a bibliographic item to the date of an event. Check dcterms:created and other for proper specializations for this property
A summary of the resource.
http://purl.org/ontology/bibo/
abstract
stable
The date on which a legal case is argued before a court. Date is of format xsd:date
http://purl.org/ontology/bibo/
date argued
unstable
An chapter number
http://purl.org/ontology/bibo/
chapter
unstable
This property is for a plain-text rendering of the content of a Document. While the plain-text content of an entire document could be described by this property.
http://purl.org/ontology/bibo/
content
true
unstable
bibo:content has been deprecated; we recommend to use "rdf:value" for this purpose. Here is the rational behind this choice: http://www.w3.org/TR/2004/REC-rdf-primer-20040210/#rdfvalue
The name defining a special edition of a document. Normally its a literal value composed of a version number and words.
http://purl.org/ontology/bibo/
edition
stable
An issue number
http://purl.org/ontology/bibo/
issue
stable
A description (often numeric) that locates an item within a containing document or collection.
http://purl.org/ontology/bibo/
locator
stable
The number of pages contained in a document
http://purl.org/ontology/bibo/
number of pages
stable
The number of volumes contained in a collection of documents (usually a series, periodical, etc.).
http://purl.org/ontology/bibo/
number of volumes
stable
A generic item or document number. Not to be confused with issue number.
http://purl.org/ontology/bibo/
number
stable
Ending page number within a continuous page range.
http://purl.org/ontology/bibo/
page end
stable
Starting page number within a continuous page range.
http://purl.org/ontology/bibo/
page start
stable
A string of non-contiguous page spans that locate a Document within a Collection. Example: 23-25, 34, 54-56. For continuous page ranges, use the pageStart and pageEnd properties.
http://purl.org/ontology/bibo/
pages
stable
The prefix of a name
http://purl.org/ontology/bibo/
prefix name
stable
A section number
http://purl.org/ontology/bibo/
section
unstable
Di Rado, Alicia. 1995. Trekking through college: Classes explore
modern society using the world of Star trek. Los Angeles Times, March
15, sec. A, p. 3.
The abbreviation of a title.
http://purl.org/ontology/bibo/
short title
stable
The suffix of a name
http://purl.org/ontology/bibo/
suffix name
stable
Universal Resource Identifier of a document
http://purl.org/ontology/bibo/
uri
stable
A volume number
http://purl.org/ontology/bibo/
volume
stable
Used to name the locality of a publisher, an author, etc.
A relation between a informational entity and its actual value (numeric, date, text, etc).
core
nlp
relations
sadi
has value
This is the property we choose to use to describe the family name of a person related to a bibliographic resource.
This is the property we choose to describe the given name of a Person related to a bibliographic resource. This is the first name of a person.
materialsmine:AC_DielectricConstant
AC Dielectric Constant
A frequency-dependent measure of the electric polarizability of a dielectric material under an oscillating electric field.
materialsmine:AC_DielectricDispersion
AC Dielectric Dispersion
Frequency dependence of dielectric permittivity under an oscillating electric field.
materialsmine:Abbreviation
Abbreviation
a shortened form of a word or phrase. It consists of a group of letters taken from the word or phrase.
https://en.wikipedia.org/wiki/Abbreviation
materialsmine:AbsoluteUnitOfMeasurement
materialsmine:AcceleratingVoltage
//AcceleratingVoltage
Accelerating Voltage
materialsmine:Additive
Additive
A chemical substance that is blended in to a polymer to acheive a desired effect.
Additive used in composite synthesis
materialsmine:Air
Air
Gaseous medium surrounding the solid boundaries of a material.
materialsmine:AmbientCondition
Ambient Condition
Ambient conditions
materialsmine:Amperage
Amperage
materialsmine:ArcResistance
Arc Resistance
A measure of the durability of an insulating or dielectric material against the formation of conductive paths along thesurface by arc discharges.
materialsmine:AspectRatio
Aspect Ratio
is the ratio of its sizes in different dimensions. For example, the aspect ratio of a rectangle is the ratio of its longer side to its shorter side – the ratio of width to height, when the rectangle is oriented as a "landscape".
https://en.wikipedia.org/wiki/Aspect_ratio
materialsmine:Atactic
Atactic
In atactic macromolecules the substituents are placed randomly along the chain. The percentage of meso diads is between 1 and 99%. With the aid of spectroscopic techniques such as NMR it is possible to pinpoint the composition of a polymer in terms of the percentages for each triad.
https://en.wikipedia.org/wiki/Tacticity#Atactic_polymers
materialsmine:AtomicForceMicroscopy
//Atomic_Force_Microscopy
Atomic Force Microscopy
Nanoscale probing of material surface characteristics
materialsmine:BallMilling
Ball Milling
Grinding process with rotating cylindrical shells and ball
materialsmine:BandGap
Band Gap
A band of frequencies for which there do not exist eigenfrequency solutions in the dispersion relation (for any wavevector).
materialsmine:BandGapIndex
Band Gap Index
Integer rank of a band gap.
materialsmine:BandGapLocation
Band Gap Location
The center of the band gap. This can be computed as the average of the upper bound and lower bound of the bandgap.
materialsmine:BandGapSize
Band Gap Size
The width of the band gap. This can be computed as the upper bound of the bandgap minus the lower bound of the bandgap.
materialsmine:BandGapType
Band Gap Type
If the band gap is particular to a specific type of mode, which type of mode?
materialsmine:BarrelTemperature
Barrel Temperature
materialsmine:Binary2DGeometry
Binary 2D Geometry
A string that represents the entire pixelated unit cell, e.g, using 0s and 1s to represent different material compositions at each pixel.
materialsmine:Book
Book
materialsmine:BreakdownStrength
Breakdown Strength
The electric field at which the probability of failure is ln(-ln(1-p)) = 0, or approximately p = 0.632.
materialsmine:BrittleTemperature
Brittle Temperature
Brittleness temperature is the temperature at which 50% of the tested specimens exhibit brittle failure at specified impact conditions
materialsmine:C11
C11
C matrix element with indices 1 and 1
materialsmine:C12
C12
C matrix element with indices 1 and 2
materialsmine:C16
C16
C matrix element with indices 1 and 6
materialsmine:C22
C22
C matrix element with indices 2 and 2
materialsmine:C26
C26
C matrix element with indices 2 and 6
materialsmine:C66
C66
C matrix element with indices 6 and 6
materialsmine:CMatrix
Material Stiffness Matrix
The material stiffness matrix of a linear elastic material defines the relationship between the stress and strain vector such that $\sigma = C\epsilon$, where $\sigma$ = ...
materialsmine:CMatrixElement
C Matrix Element
An element within a material stiffness matrix.
materialsmine:CMatrixIndexI
C Matrix Index I
The corresponding row of an element within a stiffness matrix (Voigt notation).
materialsmine:CMatrixIndexJ
C Matrix Index J
The corresponding column of an element within a stiffness matrix (Voigt notation).
materialsmine:CMatrixIndicesIJ
C Matrix Indices I J
The location of an element within a material stiffness matrix, in the form of the full string IJ (Voigt notation).
materialsmine:CTensor
Material Stiffness Tensor
The material stiffness tensor of a linear elastic material defines the relationship between the stress and strain tensors such that $\sigma = C\epsilon$, where $\sigma$ is the Cauchy stress tensor (a second order tensor), and $\epsilon$ is the infinitesimal strain tensor (a second order tensor).
materialsmine:CTensorElement
C Tensor Element
An element within a material stiffness tensor.
materialsmine:CTensorIndexI
C Tensor Index I
The i component of an element's location within a material stiffness tensor.
materialsmine:CTensorIndexJ
C Tensor Index J
The j component of an element's location within a material stiffness tensor.
materialsmine:CTensorIndexK
C Tensor Index K
The k component of an element's location within a material stiffness tensor.
materialsmine:CTensorIndexL
C Tensor Index L
The l component of an element's location within a material stiffness tensor.
materialsmine:CTensorIndicesIJKL
C Tensor Indices I J K L
The location of an element within a material stiffness tensor, in the form of the full string IJKL.
materialsmine:CU_Formula
Constitutional Unit Formula
a way of expressing information about the proportions of atoms that constitute a particular chemical compound, using a single line of chemical element symbols, numbers, and sometimes also other symbols, such as parentheses, dashes, brackets, commas and plus (+) and minus (−) signs.
https://en.wikipedia.org/wiki/Chemical_formula
materialsmine:CapillarySize
//CapillarySize
Capillar Size
materialsmine:CartesianVector
Cartesian Vector
A vector defined in the Cartesian coordinate system.
materialsmine:Casting
Casting
materialsmine:Centrifugation
Centrifugation
process which involves the application of the centripetal force for the sedimentation of heterogeneous mixtures with a centrifuge
materialsmine:ChannelDepth
Channel Depth
materialsmine:ChannelsPerScrew
Channels per Screw
materialsmine:CharpyImpactEnergy
Charpy Impact Energy
Energy absorbed by the sample during Charpy impact testing
materialsmine:ChemicalName
Chemical Name
materialsmine:ChemicalUsed
Chemical Used
materialsmine:CoRotation
Co-Rotation
materialsmine:Communication
Communication
materialsmine:Component
materialsmine:Composition
materialsmine:Compression
Compression
Describing countervailing forces applied inward along the central axis of a material.
materialsmine:CompressionModulus
Compression Modulus
The ratio of compressive stress to compressive strain
materialsmine:CompressionProperty
Compression Property
Properties of how the material will react to forces being applied in compression
materialsmine:CompressionStressAtBreak
Compression Stress At Break
Compression stress when specimen breaks
materialsmine:CompressionStressAtYield
Compression Stress At Yield
Compression stress at yield point
materialsmine:CompressiveCreep
Compressive Creep
creep during compressive test
materialsmine:CompressiveCreepRuptureStrength
Compressive Creep Rupture Strength
Material strength at rupture during a compressive creep test
materialsmine:CompressiveCreepRuptureTime
Compressive Creep Rupture Time
Time taken to rupture from applying load during a compressive creep test
materialsmine:CompressiveCreepStrain
Compressive Creep Strain
Profile of strain as a function of time during a compressive creep test
materialsmine:CompressiveLoadingProfile
Compressive Loading Profile
Stress vs. strain curve of during compressive loading and/or unloading test
materialsmine:CompressiveToughness
Compressive Toughness
The amount of energy a material can absorb prior to fracture under an applied compressive load.
materialsmine:CondensedBinary2DGeometry
Condensed Binary 2D Geometry
If a representative unit cell geometry has a given symmetry type, the condensed binary 2D geometry is a string that represents only the unique pixels in the pixelated geometry.
materialsmine:Condition
Condition
Description of the material's environment (e.g., during characterization)
The approximation, such as Plane Stress or Plane Strain, used to calculate the stress state of the material.
see Condition
materialsmine:ConePlateRheometery
//Rheometery[RheometerType='cone-plate']
Cone-Plate Rheometry
The liquid is placed on horizontal plate and a shallow cone placed into it. The angle between the surface of the cone and the plate is around 1–2 degrees but can vary depending on the types of tests being run. Typically the plate is rotated and the torque on the cone measured.
materialsmine:Constituent
Constituent
materialsmine:ConstitutionalUnit
Constitutional Unit
materialsmine:Cooling
Cooling
materialsmine:CoolingRate
//CoolingRate
Cooling Rate
materialsmine:Copolymer
Copolymer
polymers containing a mixture of repeat units
https://en.wikipedia.org/wiki/Polymer#Monomers_and_repeat_units
materialsmine:CounterRotation
Counter-Rotation
materialsmine:Creep
Creep
creep is the tendency of material to move slowly or deform permanently under the influence of mechanical stresses
materialsmine:CrystalPhase
Crystal Phase
A single material may have several distinct solid states capable of forming separate phases. Water is a well-known example of such a material. For example, water ice is ordinarily found in the hexagonal form ice Ih, but can also exist as the cubic ice Ic, the rhombohedral ice II, and many other forms. Polymorphism is the ability of a solid to exist in more than one crystal form. For pure chemical elements, polymorphism is known as allotropy. For example, diamond, graphite, and fullerenes are different allotropes of carbon.
https://en.wikipedia.org/wiki/Phase_(matter)#Crystal_phases
materialsmine:Crystallinity
Crystallinity
degree of structural order in a solid
materialsmine:CrystallizationTemperature
Crystallization Temperature
It is the temperature at which a solid phase begins to form, resulting in a mixture of solid particles and solution
materialsmine:CubeGeomtry
Cube Geomtry
materialsmine:CuboidalGeometry
Cuboidal Geometry
materialsmine:Curing
Curing
materialsmine:CurrentDensity
Current Density
the amount of electric current flowing per unit cross-sectional area of a material.
materialsmine:CycleInformation
//CycleInformation
Cycle Information
materialsmine:DC_DielectricConstant
DC Dielectric Constant
A measure of the electric polarizability of a dielectric material
materialsmine:DLRatio
Screw Diameter/Length Ratio
materialsmine:DMA_Mode
Dynamic Mechanical Analysis
The type of condition (e.g., temperature sweep or frequency sweep) under which a material's dynamic mechanical response is measured.
materialsmine:DOI
DOI
materialsmine:DSC_Profile
DSC Profile
Heat flow vs temperature out of a differential scanning calorimetry experiment
materialsmine:DateOfCitation
Date of Citation
materialsmine:DateOfMeasurement
Date of Measurement
materialsmine:DateOfSampleMade
Date of Sample Made
materialsmine:DegreeOfCrystallization
Degree of Crystallinity
The percentage of the crystallized region in a polymer/material. It describes the extent of the crystallization process
materialsmine:Density
Density
The density, or more precisely, the volumetric mass density, of a substance is its mass per unit volume.
degree of consistency measured by the quantity of mass per unit volume
https://en.wikipedia.org/wiki/Density
materialsmine:DieDiameter
Die Diameter
materialsmine:DielectricBreakdownStrength
Dielectric Breakdown Strength
Maximum voltage required to produce a dielectric breakdown through the material and is expressed as Volts per unit thickness.
materialsmine:DielectricLossPermittivity
Dielectric Loss Permittivity
The imaginary component of the frequency-dependent complex permittivity of a material under an oscillating electric field.
materialsmine:DielectricLossTangent
Dielectric Loss Tangent
The ratio of the imaginary to real components of permittivity, representing the dissipation of electromagnetic energy in the presence of an oscillating electric field.
materialsmine:DielectricRealPermittivity
Dielectric Real Permittivity
The real component of the frequency-dependent complex permittivity of a material under an oscillating electric field.
materialsmine:DielectricandImpedanceSpectroscopyAnalysis
//Dielectric_and_Impedance_Spectroscopy_Analysis
Dielectric and Impedance Spectroscopy Analysis
Measurement of dielectric spectroscopy (variation of dielectric constant with frequency)
materialsmine:DifferentialScanningCalorimetry
//Differential_Scanning_Calorimetry
Differential Scanning Calorimetry
Measurement of heat required to increase unit temperature in a material
materialsmine:Dimension
Dimension
materialsmine:DispersionRelation
Dispersion Relation
Frequency-wavevector pairs that represent the propogation of wave modes
materialsmine:DispersionRelation1D
1D Dispersion Relation
Frequency-wavevector pairs that represent the propogation of wave modes found in a specific 1D geometry.
materialsmine:DispersionRelation2D
2D Dispersion Relation
Frequency-wavevector pairs that represent the propogation of wave modes found in a specific 2D geometry.
materialsmine:DispersionRelation3D
3D Dispersion Relation
Frequency-wavevector pairs that represent the propogation of wave modes found in a specific 3D geometry.
materialsmine:Dissolving
Dissolving
Dissolving into solution without external force
materialsmine:Drying-Evaporation
Drying Evaporation
Process for drying and evaporation of liquid solutions
materialsmine:DynamicMechanicalAnalysis
//Dynamic_Mechanical_Analysis
Dynamic Mechanical Analysis
Method to get viscoelastic behavior of materials with controlled temperature and frequency
materialsmine:DynamicProperties
materialsmine:DynamicProperty
Dynamic Property
A materials property representing the behavior of the material under some dynamic environmental force.
materialsmine:DynamicPropertyProfile
Dynamic Property Profile
A profile describing a dynamic property measurement (e.g., in dynamic mechanical analysis).
materialsmine:DynamicViscosity
Dynamic Viscosity
A measure of a fluid's resistance to flow.
materialsmine:Editor
Editor
materialsmine:Eigenfrequency
Eigenfrequency
The eigenvalue associated with a solution to the wave equation. This is the inverse time component of the dispersion relation.
materialsmine:Eigenvector
Eigenvector
The mode shape associated a solution to the wave equation for a particular eigenvalue.
materialsmine:ElasticityTensor
Elasticity Tensor
materialsmine:Elastomer
Elastomer
a polymer with viscoelasticity (having both viscosity and elasticity) and very weak inter-molecular forces, generally having low Young's modulus and high failure strain compared with other materials.
https://en.wikipedia.org/wiki/Elastomer
materialsmine:ElectricPercolationThreshold
Electric Percolation Threshold
minimum filler content in the polymer matrix after which there is no significant change in the electrical properties of the composites.
materialsmine:ElectricalConductivity
Electric Conductivity
ability of electric current to flow through a material
materialsmine:ElectricalProperty
Electrical Property
A materials property describing the material's behavior under some applied electrical field.
materialsmine:Electrometry
//Electrometry
Electrometry
Measurement of electric charge or electrical potential difference
materialsmine:ElongationAtBreak
Elongation At Break
Elongation of specimen when breaks
materialsmine:ElongationAtYield
Elongation At Yield
Tensile elongation corresponding to the yield (an increase in strain does not result in an increase in stress).
materialsmine:EmissionCurrent
//EmissionCurrent
Emission Current
materialsmine:EnergyDensity
Energy Density
amount of energy stored in a given system or region of space per unit volume or mass
materialsmine:Equipment
//Equipment
//EquipmentUsed
Equipment
Equipment Used
materialsmine:EssentialWorkOfFracture
Essential Work Of Fracture
Energy associated with cracking at the process zone
materialsmine:Eutactic
Eutactic
In eutactic macromolecules, substituents may occupy any specific (but potentially complex) sequence of positions along the chain. Isotactic and syndiotactic polymers are instances of the more general class of eutactic polymers, which also includes heterogeneous macromolecules in which the sequence consists of substituents of different kinds (for example, the side-chains in proteins and the bases in nucleic acids).
https://en.wikipedia.org/wiki/Tacticity#Eutactic_polymers
materialsmine:ExperimentalProcedure
Experimental Procedure
materialsmine:Experimenter
Experimenter
materialsmine:ExposureTime
//ExposureTime
Exposure Time
materialsmine:Extruder
Extruder
materialsmine:Extrusion
Extrusion
Process used to create objects of a fixed cross-sectional profile. A material is pushed through a die of the desired cross-section.
materialsmine:ExtrusionTemperature
Extrusion Temperature
materialsmine:FiberTensileElongation
Fiber Tensile Elongation
Elongation along grain direction in fibers
materialsmine:FiberTensileModulus
Fiber Tensile Modulus
Tensile modulus along grain direction in fibers
materialsmine:FiberTensileStrength
Fiber Tensile Strength
Tensile Stress along grain direction in fibers
materialsmine:Filler
Filler
materialsmine:FillerComponent
Filler Component
materialsmine:FillerComponentComposition
Filler Component Composition
materialsmine:FillerComponentInComposite
Filler Component in Composite
materialsmine:FillerComposition
Filler Composition
materialsmine:FillerProcessing
Filler Processing
materialsmine:FlexuralCreep
Flexural Creep
creep during flexural or bending test
materialsmine:FlexuralCreepRuptureStrength
Flexural Creep Rupture Strength
Material strength at rupture during a flexural creep test
materialsmine:FlexuralCreepRuptureTime
Flexural Creep Rupture Time
Time taken to rupture from applying load during a flexural creep test
materialsmine:FlexuralCreepStrain
Flexural Creep Strain
Profile of strain as a function of time during a flexural creep test
materialsmine:FlexuralLoadingProfile
Flexural Loading Profile
Stress vs. strain curve of during flexural loading and/or unloading test
materialsmine:FlexuralModulus
Flexural Modulus
Ratio of stress to strain in flexural deformation, or the tendency for a material to bend
materialsmine:FlexuralProperty
Flexural Property
Properties of how the material will react to forces being applied in bending
materialsmine:FlexuralStressAtBreak
Flexural Stress At Break
Flexural stress at the moment at which a test specimen tears
materialsmine:FlexuralStressAtYield
Flexural Stress At Yield
Flexural stress corresponding to the yield point
materialsmine:FlexuralToughness
Flexural Toughness
The amount of energy a material can absorb prior to fracture under an applied flexural load.
materialsmine:FlightClearance
Flight Clearance
Radial Flight Clearance
materialsmine:FlightWidth
Flight Width
materialsmine:FourierTransformInfraredSpectroscopy
//Fourier_Transform_Infrared_Spectroscopy
Fourier Transform Infrared Spectroscopy
Measurement of infrared spectrum of absorption or emission of a solid, liquid or gas
materialsmine:FractureEnergy
Fracture Energy
The energy required to create a new surface in the material, measured by the energy absorbed by the material during fracture.
materialsmine:FractureToughnessProperty
Fracture Toughness Property
Ability of material containing a crack to resist fracture
materialsmine:FrequencySweep
Frequency Sweep
A continuous variation of frequency within a pre-defined range.
materialsmine:Geometry
Geometry
Representation of the spatial extent and form of an object.
materialsmine:GeometryEncoding
Geometry Encoding
The string-based representation scheme for a geometric arrangement.
materialsmine:GlassTransitionTemperature
Glass Transition Temperature
is the temperature region where the polymer transitions from a hard, glassy material to a soft, rubbery material.
materialsmine:GraftDensity
Graft Density
A result of surface treatment process, the graft density quantifies the area density of surface-treatment molecules on the surface of the filler, typically in units of chains/nm^2.
materialsmine:GroupVelocity
Group Velocity
The group velocity associated with a solution to the wave equation. This can be computed as the gradient of the eigenfrequency with respect to the wavevector.
materialsmine:GrowthRateOfCrystal
Growth Rate Of Crystal
Rate of the crystallization process
materialsmine:GrowthRateParameterOfAvramiEquation
Growth Rate Parameter Of Avrami Equation
Growth Rate Parameter in Avrami Equation
materialsmine:HalflifeOfCrystallization
Halflife Of Crystallization
The time required for half of a material to form a crystalline structure under some condition.
materialsmine:Hardener
Hardener
A chemical additive that increases the viscosity of a polymer.
materialsmine:HardnessProperty
Hardness Property
Materials property representing the material's resistance to deformation under an applied compressive load from a test fixture of known tip geometry.
materialsmine:HardnessScale
Hardness Scale
A standard numerical scale associated with a particular hardness test tip geometry.
materialsmine:HardnessTestStandard
Hardness Test Standard
A materials testing standard, created by a standards body such as ASTM, defining test parameters such as pre-load, load, and tip geometry of the testing apparatus.
materialsmine:HardnessValue
Hardness Value
The numerical value of hardness output by the testing apparatus, given a particular hardness scale as input.
materialsmine:HeatOfCrystallization
Heat Of Crystallization
The amount of heat that must be removed from one gram of a liquid at its freezing point to freeze it with no change in temperature.
materialsmine:HeatOfFusion
Heat Of Fusion
change in enthalpy with energy dissipation
materialsmine:Heating
Heating
Process for applying heat
materialsmine:HeatingRate
//HeatingRate
Heating Rate
materialsmine:HeatingZone
Heating Zone
materialsmine:HeatingZoneNumber
Heating Zone Number
materialsmine:HexagonalGeometry
Hexagonal Geometry
materialsmine:HighPressureCapillaryRheometery
//Rheometery[RheometerType='high pressure capillary']
High Pressure Capillary Rheometry
materialsmine:HighShearMixing
High Shear Mixing
A stator-rotator setup that disperses substance into continuous phase through high shear
materialsmine:Homopolymer
Homopolymer
polymers that contain only a single type of repeat unit
https://en.wikipedia.org/wiki/Polymer#Monomers_and_repeat_units
materialsmine:HotPressing
Hot-Processing (Compression Molding)
Applying heat and pressure
materialsmine:ISBN
ISBN
materialsmine:ISSN
ISSN
materialsmine:IZOD_Area
IZOD Area
Area associated in Izod impact testing
materialsmine:IZOD_ImpactEnergy
IZOD Impact Energy
Energy absorbed by the sample during Izod impact testing, as calculated by the height of swing arm
materialsmine:Impact
Impact
Izod impact resistance of materials
materialsmine:ImpactToughness
Impact Toughness
The amount of impact energy a material can absorb prior to fracture.
materialsmine:Impedance
Impedance
The effective resistance to an alternating current.
materialsmine:In-SituPolymerization
In-Situ Polymerization
Mixing of nanoparticles within liquid monomer so that polymer formation results in embedding of particles
materialsmine:Index
Index
materialsmine:Inert
Inert
materialsmine:InjectionMolding
Injection Molding
materialsmine:InnerBarrelDiameter
Inner Barrel Diameter
materialsmine:Institution
Institution or Lab
materialsmine:InterfacialTension
Interfacial Tension
Interfacial tension is the force that holds the surfaceof a particular phase together
materialsmine:InterphaseThickness
Interphase Thickness
Thickness of matrix-particle interaction area with a gradient property as a function of distance from particle surface
materialsmine:IrreducibleBrillouinZone
Irreducible Brillouin Zone
The smallest subspace of wavevector space that can be tesselated to form the dispersion relation over the entire wavevector space. Also the largest subspace of wavevector space that does not contain redundant information. The shape and size of this subspace depends on the geometry and symmetry of the unit cell.
materialsmine:IrreducibleBrillouinZoneContour
Irreducible Brillouin Zone Contour
A contour in wavevector space that traverses the perimeter of the Irreducible Brillouin Zone.
materialsmine:Isotactic
Isotactic
Isotactic polymers are composed of isotactic macromolecules (IUPAC definition). In isotactic macromolecules all the substituents are located on the same side of the macromolecular backbone. An isotactic macromolecule consists of 100% meso diads. Polypropylene formed by Ziegler-Natta catalysis is an isotactic polymer. Isotactic polymers are usually semicrystalline and often form a helix configuration.
https://en.wikipedia.org/wiki/Tacticity#Isotactic_polymers
materialsmine:JIntegral
J Integral
In fracture mechanics, the J-integral represents the energy required to advance a crack in a material (related to the fracture toughness).
materialsmine:KFactor
K Factor
In fracture mechanics, the Stress Intensity Factor, K, describes the stress state at the tip of a crack in a material.
materialsmine:LC_PhaseTransitionTemperature
LC Phase Transition Temperature
temperature of transition to liquid crystal phase
materialsmine:LatticeVector
Lattice vector
A matrix composed of multiple Cartesian vectors, each representing a lattice vector. The combination of lattice vectors define the lattice geometry.
materialsmine:LengthOfHeatingZone
Length Of Heating Zone
materialsmine:LinearElastic
Linear Elastic
If a material is linear elastic, it means that it can be well-modeled by the theory of linear elasiticity. This means that deformations and strains are linearly proportional to loads. It also means that the technique of superposition can be applied.
Infinitesimal material deformation or deformation within the linear regime
materialsmine:LinearExpansionCoefficient
Linear Expansion Coefficient
It is the fractional change in length per degree of temperature change
materialsmine:Magnification
//Magnification
Magnification
materialsmine:ManufacturerOrSourceName
Manufacturer Or Source Name
An organization that enages in the value added production of merchandise for use or sale using labour and machines, tools, chemical and biological processing, or formulation.
https://en.wikipedia.org/wiki/Manufacturing
materialsmine:MassFraction
Mass Fraction
materialsmine:MasterCurve
Master Curve
see Rheological Master Curve
materialsmine:Matrix
Matrix
materialsmine:MatrixComponent
Matrix Component
materialsmine:MatrixComponentComposition
Matrix Component Composition
materialsmine:MatrixProcessing
Matrix Processing
materialsmine:MeasurementMethod
Measurement Method
A method or process used to obtain a measure of some property.
materialsmine:MechanicalMixing
Mechanical Mixing
Manual mixing
materialsmine:MechanicalProperty
Mechanical Property
A materials property related to the response of a material under some external applied load.
materialsmine:MeltMixing
Melt Mixing
Mixing of polymer and nanoparticles in molten state
materialsmine:MeltProcessing
Melt Processing
Mixing of polymer and nanoparticles in molten state
materialsmine:MeltTemperature
Melt Temperature
materialsmine:MeltViscosity
Melt Viscosity
The viscosity of a polymer in its melt (liquid) state.
materialsmine:MeltingTemperature
Melting Temperature
the temperature at which a solid turns into a liquid
materialsmine:Metamaterial
Metamaterial
A material which has a structure above the atomic scale, but below the macroscopic scale.
materialsmine:Mixer
Mixer
materialsmine:Mixing
Mixing
Processes for mixing of multiple substances
materialsmine:MixingMethod
Mixing Method
materialsmine:Molding
Molding
Methods to shape final composite
materialsmine:MolecularWeight
Molecular Weight
materialsmine:MolecularWeight_Mn
Molecular Weight
Number Average Molar Mass
Mn, the number averaged molecular weight, typically in units g/mol, kg/mol, or kDa, describes the arithmetic mean of the matrix polymer chains.
materialsmine:MolecularWeight_Mw
Molecular Weight
Mass Average Molar Mass
Mw, the weight averaged molecular weight, typically in units g/mol, kg/mol, or kDa, describes the average size of the matrix polymer chains.
materialsmine:MolecularWeight_zAverage
Molecular Weight Z Average
materialsmine:Nanocomposite
Nanocomposite
a multiphase solid material where one of the phases has one, two or three dimensions of less than 100 nanometers (nm), or structures having nano-scale repeat distances between the different phases that make up the material. In the broadest sense this definition can include porous media, colloids, gels and copolymers, but is more usually taken to mean the solid combination of a bulk matrix and nano-dimensional phase(s) differing in properties due to dissimilarities in structure and chemistry.
https://en.wikipedia.org/wiki/Nanocomposite
materialsmine:Nanomaterial
Nanomaterial
materials of which a single unit is sized (in at least one dimension) between 1 and 1000 nanometres (10−9 meter) but is usually 1—100 nm
https://en.wikipedia.org/wiki/Nanomaterials
materialsmine:NonSpherical
Non-spherical Shape
materialsmine:Notched
Notched
Property of a material sample, in which a uniform notch has been created for the purpose of concentrating stress in a region of interest.
materialsmine:NuclearMagneticResonance
//Nuclear_Magnetic_Resonance
Nuclear Magnetic Resonance
Molecular analysis due to observed NMR under applied magnetic field
materialsmine:NucleationParameterOfAvramiEquation
Nucleation Parameter Of Avrami Equation
Nucleation Parameter in Avrami Equation
materialsmine:OpticalMicroscopy
//OpticalMicroscopy
Optical Microscopy
Magnification of small objects with visible light
materialsmine:Other
Other Processing Parameter
materialsmine:OtherProcessing
Other Processing
materialsmine:Other_Processing
Other Processing
materialsmine:Output
Output
materialsmine:ParallelepipedGeometry
Parallelepiped Geometry
materialsmine:Particle
Particle
particles between 1 and 100 nanometers in size. In nanotechnology, a particle is defined as a small object that behaves as a whole unit with respect to its transport and properties.
https://en.wikipedia.org/wiki/Nanoparticle
materialsmine:ParticleDiameter
Particle Diameter
Assuming sphere-like particles comprising the filler, the particle diameter is the "average" diameter of those particles.
materialsmine:ParticleSurfaceTreatmentComposition
Particle Surface Treatment Composition
materialsmine:PhaseVelocity
Phase Velocity
The phase velocity associated with a solution to the wave equation. This can be computed as the eigenfrequency divided by each component of the wavevector.
materialsmine:Pixel
Pixel
A discretized, symbolic representation of a material substance in 2D space.
materialsmine:PixelCountVector
Pixel Count Vector
A vector with each entry representing the number (count) of pixels along each of the lattice vectors.
materialsmine:PixelLengthVector
Pixel Length Vector
A vector with each entry representing the length (defined in physical units, e.g. m) per pixel along each of the lattice vectors.
materialsmine:PlaneStrain
Plane Strain
A state of strain where the out of plane component of strain is zero.
materialsmine:PlaneStress
Plane Stress
A state of stress where the out of plane component of stress is zero.
materialsmine:Plastic
Plastic
a material consisting of any of a wide range of synthetic or semi-synthetic organic compounds that are malleable and can be molded into solid objects. Plastics are typically organic polymers of high molecular mass, but they often contain other substances.
https://en.wikipedia.org/wiki/Plastic
materialsmine:PlasticElastic
Plastic Elastic
Material deformation that undergoes both elastic and plastic deformation
materialsmine:PlateRheometery
//Rheometery[RheometerType='plate']
Plate Rheometry
The falling plate rheometer sandwiches liquid between two solid surfaces. The top plate is fixed, and bottom plate falls under the influence of gravity, drawing out a string of the liquid
materialsmine:PoissonsRatio
Poissons Ratio
Negative ratio of traverse to axial strain
materialsmine:Polydispersity
Polydispersity
Dispersity
materialsmine:PolymerBlend
Polymer Blend
a member of a class of materials analogous to metal alloys, in which at least two polymers are blended together to create a new material with different physical properties.
https://en.wikipedia.org/wiki/Polymer_blend
materialsmine:PolymerMixture
Polymer
materialsmine:PolymerNanocomposite
Polymer Nanocomposite
PNC
Polymer nanocomposites (PNC) consist of a polymer or copolymer having nanoparticles or nanofillers dispersed in the polymer matrix. These may be of different shape (e.g., platelets, fibers, spheroids), but at least one dimension must be in the range of 1–50 nm.
https://en.wikipedia.org/wiki/Polymer_nanocomposite
materialsmine:Power
Power
materialsmine:PreCrackingProcess
Precracking Process
The process of establishing an initiator crack or groove in a test specimen such that the failure of the test specimen deterministically begins at the established location.
materialsmine:PreLoad
Pre-Load
Pre-stress or pre-strain before testing
materialsmine:PressureAtDie
Pressure at Die
materialsmine:ProbabilityOfFailure
Probability of Failure
As the electric field is intensified, the probability of failure is the likelihood that a breakdown channel forms across the test specimen.
materialsmine:ProceedingsArticle
Conference Proceedings Article
An article published in the proceedings of a conference.
materialsmine:Processing
materialsmine:ProcessingCondition
Processing Condition
materialsmine:Profile
Profile
A data series.
materialsmine:PubChemReference
PubChem Reference
materialsmine:PublicationYear
Publication Year
materialsmine:PulsedElectroAcoustic
//Pulsed_Electro_Acoustic
Pulsed Electro Acoustic
Measurement of space charge in dielectric materials
materialsmine:RadialClearence
Radial Clearence
materialsmine:RamanSpectroscopy
//Raman_Spectroscopy
Raman Spectroscopy
Molecular analysis with spectroscopic techniques that observe low-frequency modes in a material
materialsmine:RectangularGeometry
Rectangular Geometry
materialsmine:RelatedDOI
related DOI
materialsmine:ResearchArticle
Research Article
materialsmine:ResidenceTime
Residence Time
materialsmine:ReviewArticle
Review Article
materialsmine:RheologicalComplexModulus
Rheological Complex Modulus
The ratio of shear-stress amplitude to strain amplitude of a material under oscillating shear stress.
materialsmine:RheologicalLossModulus
Rheological Loss Modulus
The deformation energy dissipated within a material when subject to shear; the viscous component of the complex modulus.
materialsmine:RheologicalLossTangent
Rheological Loss Tangent
The damping factor, or the ratio of storage to loss moduli; for ideally elastic materials, the damping factor is zero; for ideally viscous materials, the damping factor is infinite.
materialsmine:RheologicalMasterCurve
Rheological Master Curve
The superposition of rheological data taken at different temperatures in a given frequency range, where the curves are horizontally shifted to form a continuous master curve spanning a much larger frequency range that would otherwise be experimentally intractable or infeasible.
materialsmine:RheologicalProperty
Rheological Property
A property related to the flow of a material.
materialsmine:RheologicalStorageModulus
Rheological Storage Modulus
The deformation energy stored within a material when subject to shear; the elastic component of the complex modulus.
materialsmine:RheologicalViscosity
Rheological Viscosity
The resistance of a fluid to flow.
materialsmine:RheometerMode
Rheometer Mode
The type of condition (e.g., temperature sweep or frequency sweep) under which a material's rheological response is measured.
materialsmine:Rheometery
//Rheometery
Rheometry
Measurement of the quantitative and qualitative relationships between deformations and stresses and their derivatives
materialsmine:RollMilling
Roll Milling
Grinding process with a roller and flat plate
materialsmine:RotationMode
Rotation Mode
materialsmine:RotationSpeed
Rotation Speed
materialsmine:RotationalFrequency
Rotational Frequency
The number of rotations of an object around an axis per unit time.
materialsmine:RotationalMolding
Rotational Molding
materialsmine:SMILES
SMILES
materialsmine:SampleShape
Sample Shape
The geometric form of a test specimen.
materialsmine:ScanningElectronMicroscopy
//Scanning_Electron_Microscopy
Scanning Electron Microscopy
Scanning electron microscopy for obtaining microstructure at microscale
materialsmine:ScrewChannelDiameter
Screw Channel Diameter
materialsmine:ScrewChannelWidth
Screw Channel Width
materialsmine:ScrewDiameter
Screw Diameter
materialsmine:ScrewLead
Screw Lead
materialsmine:ScrewLength
Screw Length
materialsmine:Shear
Shear
Describing opposing in-plane forces on a material.
materialsmine:ShearLoadingProfile
Shear Loading Profile
Stress vs. strain curve of during shear loading and/or unloading test
materialsmine:ShearModulus
Shear Modulus
Ratio of shear stress to shear strain
materialsmine:ShearProperty
Shear Property
Properties of how the material will react to forces being applied in shear
materialsmine:ShearStressAtBreak
Shear Stress At Break
Shear stress when specimen breaks
materialsmine:ShearStressAtYield
Shear Stress At Yield
Shear stress at yield point
materialsmine:SingleScrew
Single Screw Extruder
materialsmine:SolutionProcessing
Solution Processing
Mixing of dissolvable polymer with nanoparticles
materialsmine:Solvent
Solvent
Solvent used in composite synthesis
materialsmine:SolventAmount
Solvent Amount
materialsmine:SolventName
Solvent Name
materialsmine:SpecificHeatCapacity_Cp
Specific Heat Capacity Cp
Cp for a gas is the change in the enthalpy (H) of the system with respect to change in temperature at a fixed pressure of the system
materialsmine:SpecificHeatCapacity_Cv
Specific Heat Capacity Cv
Cv for a gas is the change in internal energy (U) of a system with respect to change in temperature at a fixed volume of the system
materialsmine:SpecificSurfaceArea
Specific Surface Area
materialsmine:Spectroscopy
Spectroscopy
The chemical composition ,composition variation ,crystal structure & photo-electric properties of the materials.
materialsmine:SquareGeometry
Square Geometry
materialsmine:StdChemicalName
StdChemicalName
materialsmine:Stirring
Stirring
Manual stirring of liquid solutions
materialsmine:Strain
Strain
Engineering strain is defined as the amount of deformation in the direction of the applied force divided by the initial length of the material.
materialsmine:StrainAmplitude
Strain Amplitude
The magnitude of forced displacement of a material sample.
The maximum magnitude of forced displacement under oscillatory loading conditions.
materialsmine:StrainAtBreak
Strain at Break
The strain at which the material fractures (e.g. during a tensile test)
materialsmine:StrainRate
Strain Rate
Rate of strain change
see Strain Rate
materialsmine:StrainSweep
Strain Sweep
A continuous variation of strain (amplitude) within a pre-defined range.
materialsmine:Stress
Stress
When a material is loaded with a force, it produces a stress, which then causes a material to deform.
materialsmine:StressRelaxation
Stress Relaxation
Stress relaxation, which occurs when a viscoelastic test specimen is brought to a fixed strain and held, is the gradual release of internal stress due to the viscous nature of the test specimen.
materialsmine:StressTensor
Stress Tensor
materialsmine:StressVector
Stress Vector
materialsmine:SurfaceChemistryProcessing
Surface Chemistry Processing
materialsmine:SurfaceResistivity
Surface Resistivity
Ability to resist leakage current along the surface of an insulating material
materialsmine:SurfaceTension
Surface Tension
the force that causes the molecules on the surface of a liquid to be pushed together and form a layer
materialsmine:SurfaceTreatment
Surface Treatment
materialsmine:Symmetry
Symmetry
Symmetry group? Bravais lattice? (wondering if we need to separate out into more specific terms)
materialsmine:Syndiotactic
Syndiotactic
In syndiotactic or syntactic macromolecules the substituents have alternate positions along the chain. The macromolecule consists 100% of racemo diads. Syndiotactic polystyrene, made by metallocene catalysis polymerization, is crystalline with a melting point of 161 °C. Gutta percha is also an example for Syndiotactic polymer.
https://en.wikipedia.org/wiki/Tacticity#Syndiotactic_polymers
materialsmine:Tacticity
Tacticity
the relative stereochemistry of adjacent chiral centers within a macromolecule.
https://en.wikipedia.org/wiki/Tacticity
materialsmine:TangoBlack
Tango Black
A specific 3D printable material.
materialsmine:TechnicalComment
Technical Comment
materialsmine:TemperatureSweep
Temperature Sweep
A continuous variation of temperature within a pre-defined range.
materialsmine:Tensile
Tensile
Describing countervailing forces applied outward along the central axis of a material.
materialsmine:TensileCreep
Tensile Creep
creep during tensile test
materialsmine:TensileCreepCompliance
Tensile Creep Compliance
Inverse of tensile creep modulus
materialsmine:TensileCreepModulus
Tensile Creep Modulus
Elastic modulus during creep test
materialsmine:TensileCreepRecovery
Tensile Creep Recovery
Ability of material to recover to original state after creep
materialsmine:TensileCreepRuptureStrength
Tensile Creep Rupture Strength
Material strength at rupture during a tensile creep test
materialsmine:TensileCreepRuptureTime
Tensile Creep Rupture Time
Time taken to rupture from applying load during a tensile creep test
materialsmine:TensileCreepStrain
Tensile Creep Strain
Profile of strain as a function of time during a tensile creep test
materialsmine:TensileLoadingProfile
Tensile Loading Profile
Stress vs. strain curve of during tensile loading and/or unloading test
materialsmine:TensileModulus
Tensile Modulus
Young's modulus, or elastic modulus, describes tensile elasticity, or the tendency of an object to deform along an axis when opposing forces are applied along that axis; it is defined as the ratio of tensile stress to tensile strain.
materialsmine:TensileProperty
Tensile Property
Properties of how the material will react to forces being applied in tension.
materialsmine:TensileStrength
Tensile Strength
The maximum engineering stress experienced by a test specimen during a tensile test, at which point the material begins to fail catastrophically.
materialsmine:TensileStressAtBreak
Tensile Stress At Break
Tensile stress at the moment at which a test specimen tears
materialsmine:TensileStressAtYield
Tensile Stress At Yield
Tensile stress corresponding to the yield point (an increase in strain does not result in an increase in stress).
materialsmine:TensileToughness
Tensile Toughness
The amount of energy a material can absorb prior to fracture under an applied tensile load.
materialsmine:ThermalConductivity
Thermal Conductivity
a measure of the ability of a substance to conduct heat, determined by the rate of heat flownormally through an area in the substance divided by the area and by minus the component of the temperaturegradient in the direction of flow
materialsmine:ThermalDecompositionTemperature
Thermal Decomposition Temperature
Thermal decomposition temperature of a substance is the temperature at which the substance chemically decomposes by heat
materialsmine:ThermalDiffusivity
Thermal Diffusivity
thermal diffusivity is the thermal conductivity divided by density and specific heat capacity at constant pressure. It measures the rate of transfer of heat of a material from the hot side to the cold side
materialsmine:ThermalProperty
Thermal Property
A material's property describing the materials ability to absorb, conduct, or otherwise interact with energy in the form of heat.
materialsmine:ThermogravimetricAnalysis
//Thermogravimetric_Analysis
Thermogravimetric Analysis
Thermal analysis of material properties as function of temperature and time
materialsmine:Thermoplastic
Thermoplastic
a plastic material, a polymer, that becomes pliable or moldable above a specific temperature and solidifies upon cooling.
https://en.wikipedia.org/wiki/Thermoplastic
materialsmine:Thermoset
Thermoset
a cured thermosetting resin. A thermosetting resin is a prepolymer in a soft solid or viscous liquid state that changes irreversibly into an infusible, insoluble polymer network by curing.
https://en.wikipedia.org/wiki/Thermosetting_polymer
materialsmine:Throughput
Throughput
materialsmine:Torque
Torque
materialsmine:Torsion
Torsion
Describing countervailing rotational forces about the central axis of a material, separated by some distance along the central axis of the material; "twisting" force
materialsmine:Total
Total
materialsmine:TradeName
Trade Name
The common, non-chemical name for a chemical substance.
materialsmine:TransmissionElectronMicroscopy
//Transmission_Electron_Microscopy
Transmission Electron Microscopy
Transmission electron microscopy for obtaining microstructure at nanoscale
materialsmine:TriangularGeometry
Triangular Geometry
materialsmine:TwinScrew
Twin Screw Extruder
materialsmine:Ultra-sonication
Ultra Sonication
The irradiation of a liquid sample with ultrasonic (>20 kHz) waves resulting in agitation
materialsmine:UnitCellExtent_X
Unit Cell Extent X
Extent of the unit cell in the x direction (requires units, such as mm:Pixel)
materialsmine:UnitCellExtent_Y
Unit Cell Extent Y
Extent of the unit cell in the y direction (requires units, such as mm:Pixel)
materialsmine:UnitCellExtent_Z
Unit Cell Extent Z
Extent of the unit cell in the z direction (requires units, such as mm:Pixel)
materialsmine:Vacuum
Vacuum
materialsmine:VacuumMolding
Vacuum Molding
materialsmine:VeroWhite
Vero White
A specific 3D printable material.
materialsmine:ViscoelasticProperty
Viscoelastic Property
Properties of materials that exhibit both viscous and elastic behaviors
materialsmine:Viscosity
Viscosity
a measure of its resistance to gradual deformation by shear stress or tensile stress.
https://en.wikipedia.org/wiki/Viscosity
materialsmine:Voltage
Voltage
materialsmine:VolumeExpansionCoefficient
Volume Expansion Coefficient
volumetric coefficient of thermal expansion
materialsmine:VolumeFraction
Volume Fraction
The volume of a constituent divided by the volume of all constituents of the mixture prior to mixing.
materialsmine:VolumeResistivity
Volume Resistivity
Ability to oppose the flow of electric current.
materialsmine:VolumetricProperty
Volumetric Property
A property related to the three-dimensional volume of a material.
materialsmine:Voxel
Voxel
A discretized, symbolic representation of a material substance in 3D space.
materialsmine:WaterAbsorption
Water Absorption
The amount of weight gain (%) experienced in a polymer after immersion in water for a specific length of time under controlled environment.
materialsmine:Wavenumber
Wavenumber
The wavenumber of a wave is the inverse of the wavelength. This is the inverse space component of the dispersion relation for a one-dimensional analysis.
materialsmine:Wavevector
Wavevector
The wavevector is the multi-dimensional generalization of wavenumber. The wavevector of a wave is the inverse of the wavelength in each of the spatial directions. It also points in the same direction as the phase velocity of the wave.
materialsmine:WeibullParameter
Weibull Parameter
materialsmine:WeibullPlot
Weilbull Plot
A plot of failure probability versus electric field, typically with the probability y-axis scaled according to the Weibull distribution as ln(-ln(1-p)).
materialsmine:WeightLoss
Weight Loss
The loss of mass of a material under some condition (e.g., increasing temperature during thermogravimetric analysis)
materialsmine:WorkingDistance
//WorkingDistance
Working Distance
materialsmine:XRayDiffractionAndScattering
//XRay_Diffraction_and_Scattering
XRay Diffraction and Scattering
Non-destructive X-ray measurement for crystal structure, chemical composition, and physical properties
materialsmine:XRayPhotoelectronSpectroscopy
//XRay_Photoelectron_Spectroscopy
X-Ray Photoelectron Spectroscopy
materialsmine:XRay_Photoelectron_Spectroscopy
//XRay_Photoelectron_Spectroscopy
X-Ray Photoelectron Spectroscopy
X-Ray Photoelectron Spectroscopy (abbr. XPS) is a spectroscopy for material characterization;
materialsmine:uSMILES
uSMILES
1D Geometry
One-dimensional geometry, which can be fully described as a function of one coordinate.
2D Geometry
Two-dimensional geometry which can be fully described as a function of two coordinates
3D Geometry
Three-dimensional geometry which can be fully described as a function of three coordinates.
event:Event
Used to describe bibliographic related events such as conferences, hearing, etc.
terms:Agent
BIBO assert that a dcterms:Agent is an equivalent class to foaf:Agent.
This means that all the individuals belonging to the foaf:Agent class
also belongs to the dcterms:Agent class. This way, dcterms:contributor
can be used on foaf:Person, foaf:Organization, foaf:Agent and foaf:Group.
Even if this link is not done in neither the FOAF nor the DCTERMS ontologies this is a wide spread fact that is asserted by BIBO.
bibo:AcademicArticle
A scholarly academic article, typically published in a journal.
http://purl.org/ontology/bibo/
Academic Article
stable
bibo:Article
A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a book or other publication, as a newspaper or magazine.
http://purl.org/ontology/bibo/
Article
stable
bibo:AudioDocument
An audio document; aka record.
http://purl.org/ontology/bibo/
audio document
stable
bibo:AudioVisualDocument
An audio-visual document; film, video, and so forth.
http://purl.org/ontology/bibo/
audio-visual document
stable
bibo:Bill
Draft legislation presented for discussion to a legal body.
http://purl.org/ontology/bibo/
Bill
stable
bibo:Book
A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers.
http://purl.org/ontology/bibo/
Book
stable
bibo:BookSection
A section of a book.
http://purl.org/ontology/bibo/
Book Section
unstable
bibo:Brief
A written argument submitted to a court.
http://purl.org/ontology/bibo/
Brief
unstable
bibo:Chapter
A chapter of a book.
http://purl.org/ontology/bibo/
Chapter
unstable
1
bibo:Code
A collection of statutes.
http://purl.org/ontology/bibo/
Code
stable
1
bibo:CollectedDocument
A document that simultaneously contains other documents.
http://purl.org/ontology/bibo/
Collected Document
stable
bibo:Collection
A collection of Documents or Collections
http://purl.org/ontology/bibo/
Collection
stable
bibo:Conference
A meeting for consultation or discussion.
http://purl.org/ontology/bibo/
Conference
stable
1
bibo:CourtReporter
A collection of legal cases.
http://purl.org/ontology/bibo/
Court Reporter
stable
bibo:Document
A document (noun) is a bounded physical representation of body of information designed with the capacity (and usually intent) to communicate. A document may manifest symbolic, diagrammatic or sensory-representational information.
http://purl.org/ontology/bibo/
Document
stable
1
bibo:DocumentPart
a distinct part of a larger document or collected document.
http://purl.org/ontology/bibo/
document part
unstable
bibo:DocumentStatus
The status of the publication of a document.
http://purl.org/ontology/bibo/
Document Status
stable
bibo:EditedBook
An edited book.
http://purl.org/ontology/bibo/
Edited Book
stable
bibo:Email
A written communication addressed to a person or organization and transmitted electronically.
http://purl.org/ontology/bibo/
EMail
stable
bibo:Event
bibo:Excerpt
A passage selected from a larger work.
http://purl.org/ontology/bibo/
Excerpt
stable
bibo:Film
aka movie.
http://purl.org/ontology/bibo/
Film
stable
bibo:Hearing
An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit.
http://purl.org/ontology/bibo/
Hearing
stable
bibo:Image
A document that presents visual or diagrammatic information.
http://purl.org/ontology/bibo/
Image
stable
bibo:Interview
A formalized discussion between two or more people.
http://purl.org/ontology/bibo/
Interview
stable
1
bibo:Issue
something that is printed or published and distributed, esp. a given number of a periodical
http://purl.org/ontology/bibo/
Issue
stable
1
bibo:Journal
A periodical of scholarly journal Articles.
http://purl.org/ontology/bibo/
Journal
stable
bibo:LegalCaseDocument
A document accompanying a legal case.
http://purl.org/ontology/bibo/
Legal Case Document
unstable
bibo:LegalDecision
A document containing an authoritative determination (as a decree or judgment) made after consideration of facts or law.
http://purl.org/ontology/bibo/
Decision
unstable
bibo:LegalDocument
A legal document; for example, a court decision, a brief, and so forth.
http://purl.org/ontology/bibo/
Legal Document
stable
bibo:Legislation
A legal document proposing or enacting a law or a group of laws.
http://purl.org/ontology/bibo/
Legislation
unstable
bibo:Letter
A written or printed communication addressed to a person or organization and usually transmitted by mail.
http://purl.org/ontology/bibo/
Letter
stable
1
bibo:Magazine
A periodical of magazine Articles. A magazine is a publication that is issued periodically, usually bound in a paper cover, and typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports.
http://purl.org/ontology/bibo/
Magazine
stable
bibo:Manual
A small reference book, especially one giving instructions.
http://purl.org/ontology/bibo/
Manual
unstable
bibo:Manuscript
An unpublished Document, which may also be submitted to a publisher for publication.
http://purl.org/ontology/bibo/
Manuscript
stable
bibo:Map
A graphical depiction of geographic features.
http://purl.org/ontology/bibo/
Map
unstable
bibo:MultiVolumeBook
A loose, thematic, collection of Documents, often Books.
http://purl.org/ontology/bibo/
Multivolume Book
stable
1
bibo:Newspaper
A periodical of documents, usually issued daily or weekly, containing current news, editorials, feature articles, and usually advertising.
http://purl.org/ontology/bibo/
Newspaper
stable
bibo:Note
Notes or annotations about a resource.
http://purl.org/ontology/bibo/
Note
stable
bibo:Patent
A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years.
http://purl.org/ontology/bibo/
Patent
stable
bibo:Performance
A public performance.
http://purl.org/ontology/bibo/
Performance
unstable
1
bibo:Periodical
A group of related documents issued at regular intervals.
http://purl.org/ontology/bibo/
Periodical
stable
bibo:PersonalCommunication
A communication between an agent and one or more specific recipients.
http://purl.org/ontology/bibo/
Personal Communication
stable
bibo:PersonalCommunicationDocument
A personal communication manifested in some document.
http://purl.org/ontology/bibo/
Personal Communication Document
stable
bibo:Proceedings
A compilation of documents published from an event, such as a conference.
http://purl.org/ontology/bibo/
Proceedings
unstable
bibo:Quote
An excerpted collection of words.
http://purl.org/ontology/bibo/
Quote
stable
bibo:ReferenceSource
A document that presents authoritative reference information, such as a dictionary or encylopedia .
http://purl.org/ontology/bibo/
Reference Source
unstable
bibo:Report
A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc..
http://purl.org/ontology/bibo/
Report
stable
bibo:Series
A loose, thematic, collection of Documents, often Books.
http://purl.org/ontology/bibo/
Series
stable
bibo:Slide
A slide in a slideshow
http://purl.org/ontology/bibo/
Slide
unstable
bibo:Slideshow
A presentation of a series of slides, usually presented in front of an audience with written text and images.
http://purl.org/ontology/bibo/
Slideshow
stable
bibo:Specification
A document describing a specification.
http://purl.org/ontology/bibo/
Specification
testing
bibo:Standard
A document describing a standard: a specification organized through a standards body.
http://purl.org/ontology/bibo/
Standard
stable
bibo:Statute
A bill enacted into law.
http://purl.org/ontology/bibo/
Statute
stable
bibo:Thesis
A document created to summarize research findings associated with the completion of an academic degree.
http://purl.org/ontology/bibo/
Thesis
stable
bibo:ThesisDegree
The academic degree of a Thesis
http://purl.org/ontology/bibo/
Thesis degree
stable
bibo:Webpage
A web page is an online document available (at least initially) on the world wide web. A web page is written first and foremost to appear on the web, as distinct from other online resources such as books, manuscripts or audio documents which use the web primarily as a distribution mechanism alongside other more traditional methods such as print.
http://purl.org/ontology/bibo/
Webpage
unstable
1
bibo:Website
A group of Webpages accessible on the Web.
http://purl.org/ontology/bibo/
Website
unstable
bibo:Workshop
A seminar, discussion group, or the like, that emphasizes zxchange of ideas and the demonstration and application of techniques, skills, etc.
http://purl.org/ontology/bibo/
Workshop
stable
sio:ACollectionOfDuplicates
duplicates
a collection of duplicates is a collection composed of items that are an exact copy of other items in the collection.
a collection of duplicates
sio:ACollectionOfReplicates
replicates
a collection of replicates is a collection composed of items that are a facsimile, reproduction, or copy of other items in the collection.
a collection of replicates
sio:ALittleQuantifier
a little quantifier
sio:Abnormal
A quality that has a value that is outside normal or average.
abnormal
sio:Aborted
aborted is a process status in which a started process will not complete as intended.
aborted
sio:AbstractRole
An abstract role is a role whose basis lies in spatial/temporal or comparative relations.
abstract role
sio:AbstractSection
An abstract section is a document section that provides brief summary of a document that explains the main argument(s), topic(s) or findings.
abstract section
sio:Academic
An academic is an individual that participates in education and scholarship.
academic
sio:AcademicDepartment
An academic department is a division of a university or school faculty devoted to a particular academic discipline.
academic department
sio:AcademicOrganization
An academic organization is a lawfully recognized organization that confers diplomas, degrees and other forms of recognition of academic achievement.
academic organization
sio:AcademicRole
An academic role is a social role that pertains to the academic institution.
academic role
sio:Acid
An acid is a molecular entity in solution capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid).
acid
sio:Acid-baseReaction
An acid-base reaction is a chemical reaction between an acid and a base.
acid-base reaction
sio:AcknowledgementsSection
An acknowledgements section is a document section that identifies individuals, groups or organizations for their support in the development of the work.
acknowledgements section
sio:ActiniumAtom
actinium atom
CHEBI:33337
sio:ActionSpecification
effective specification
An action specification is a specification composed of a sequence of instructions to achieve some objective.
action specification
sio:Activator
A molecular activator is a molecular regulator that realizes its disposition to conformationally change a target molecule and increase its functionality.
activator
sio:ActivatorRole
The role of a chemical entity that increases the rate of reaction.
activator role
sio:ActiveIngredient
An active ingredient is a molecular entity that exhibits biological activity.
active ingredient
sio:ActiveMovement
active movement is the process in which an object is spatially displaced using some chemical energy.
active movement
sio:ActiveSite
An active site is a molecular site in which a chemical event occurs (structural transformation or conformational change).
active site
sio:ActiveTransport
active transport is the movement of a substance across a membrane against its concentration gradient (from low to high concentration) and requires chemical energy.
biopax:TransportWithBiochemicalReaction
active transport
sio:AdditionReaction
An addition reaction is an organic reaction where two or more molecules combine to form a larger one. Addition reactions are limited to chemical compounds that have multiply-bonded atoms:
* Molecules with carbon-carbon double bonds or triple bonds
* Molecules with carbon - hetero double bonds like C=O or C=N
addition reaction
sio:Address
An address is a position that indicates the physical location of some entity using a social convention.
address
sio:AdministrativeRole
An administrative role is the role of an individual that performs administrative tasks for some organization.
administrative role
sio:Affection
affection is an emotion characterized with a feeling or type of love for another living thing.
affection
sio:Affiliation
An affiliation is a social relation which indicates the partnership between two or more entities.
affiliation
sio:Age
age is the length of time that a person has lived or a thing has existed.
age
sio:AggregatedCarbonNanorods
aggregate of carbon nanorods is an allotrope of carbon considered to be the least compressible material known, as measured by its isothermal bulk modulus; aggregated diamond nanorods have a modulus of 491 gigapascals (GPa), while a conventional diamond has a modulus of 442 GPa. ADNRs are also 0.3% denser than regular diamond.
aggregated carbon nanorods
sio:Agreement
agreement is the result of consensus decision making when members of the group agree.
agreement
sio:AgreementQuality
agreement quality is a quality that exhibits the degree of consensus for some set of assertions.
agreement quality
sio:Algorithm
An algorithm is an effective method expressed as a finite list of well-defined instructions for calculating a function.
algorithm
sio:Alive
alive is the state of a biological organism that exhibits biological functions.
alive
sio:Allele
An allele is one of a set of sequence variants of a gene.
allele
sio:AllostericSite
An allosteric site is a binding site that when bound to particular ligand changes the conformational state and affects its functionality.
allosteric site
sio:Allotrope
An allotrope is a structural variant of a chemical element.
allotrope
sio:AlphaHelix
An alpha helix is structural region of a protein that is characterized by 3.6 residues per turn, a translation of 1.5 angstroms along the helical axis in which backbone N-H groups form a hydrogen bond to the backbone carboxyl group of the amino acid four residues prior.
alpha helix
sio:Altitude
Altitude is a distance above sea level.
altitude
sio:AluminiumAtom
aluminium atom
CHEBI:28984
sio:Always
all of the time
always indicates that the event occurs at all times.
always
sio:AmericiumAtom
americium atom
CHEBI:33389
sio:AminoAcid
An amino acid is an organic molecule composed of a carbon bonded to four different groups: a carboxyl group, an amino group, an R group, and a hydrogen atom. In the case of glycine, the R group is another hydrogen atom.
amino acid
2
sio:AminoAcidPolymer
an amino acid polymer is an organic polymer composed of two or more amino acid residues.
amino acid polymer
sio:AminoAcidPolymerSubmolecule
An amino acid polymer submolecule is a submolecule of an amino acid polymer.
amino acid polymer submolecule
sio:AminoAcidResidue
An amino acid residue is a submolecule of an amino acid that is part of a larger molecule.
amino acid residue
sio:AmorphousCarbon
amorphous carbon is an allotrope of carbon that does not have any crystalline structure. As with all glassy materials, some short-range order can be observed, but there is no long-range pattern of atomic positions.
amorphous carbon
sio:Anabolism
Anabolism is the set of metabolic processes that construct larger chemical entities units from smaller chemical entities.
anabolism
sio:Analyte
an analyte is a substance or chemical constituent of interest in an analytical procedure.
analyte
sio:AnatomicalEntity
an anatomical entity is an object that is a structural part (material or immaterial) of a biological entity.
anatomical entity
sio:Anger
anger is disgust directed toward an equal status individual.
anger
sio:Angst
angst is the intense feeling of apprehension, anxiety or inner turmoil.
angst
sio:Anion
An anion is an atom or molecule with a net negative electrical charge.
anion
sio:Annotation
An annotation is a written explanatory or critical description, or other in-context information (e.g., pattern, motif, link), that has been associated with data or other types of information.
annotation
sio:Annoyance
Annoyance is an unpleasant emtion that is characterized by a abnormal or excessive sensitivity to some external stimulus.
annoyance
sio:Answer
An answer is a reply to a question.
answer
sio:Antibody
An antibody (also known as immunoglobulins, abbreviated Ig) are gamma globulin proteins that are used by the immune system to identify and neutralize foreign objects. They are typically made of two large heavy chains and two small light chains.
antibody
sio:Antigen
An antigen is a molecule that can be bound by a major histocompatibility complex (MHC) and presented to a T-cell receptor.
antigen
sio:AntimonyAtom
antimony atom
CHEBI:30513
sio:AntiportEnabledSecondaryActiveTransport
antiport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in opposite directions simultaneously.
antiport enabled secondary active transport
sio:Antonym
An antonym is a word with opposite or nearly opposite meaning.
antonym
sio:Anxiety
anxiety is an emotion charactersized by intense feeling of fear and concern coupled with a physical response.
anxiety
sio:ApartmentNumber
An apartment number is the number assigned to identify an apartment in a building of apartments.
apartment number
sio:Apathy
apathy is an emotion characterized by lack of interest, enthusiasm, or concern.
apathy
sio:Apprehension
apprehension is the negative emotion that something unpleasant will occur.
apprehension
sio:Arc
an arc is a closed segment of a differentiable curve.
arc
sio:Area
area is a quantity that pertains to the extent of a two-dimensional surface or shape, or planar lamina, in the plane.
area
sio:ArgonAtom
argon atom
CHEBI:49475
sio:Argument
An argument is a set of one or more declarative sentences (or propositions) known as the premises along with another declarative sentence (or proposition) known as the conclusion.
argument
sio:AromaticBond
An aromatic bond is an interaction between a set of atoms across which pairs of electrons are shared.
aromatic bond
sio:AromaticRing
An aromatic ring is a ring in which the electrons are delocalized across all atoms in the ring.
aromatic ring
sio:Arousal
arousal is an emotion characterized by state of reactive to stimuli. It involves the activation of the reticular activating system in the brain stem, the autonomic nervous system and the endocrine system, leading to increased heart rate and blood pressure and a condition of sensory alertness, mobility and readiness to respond.
arousal
2
sio:ArrowedLineSegment
An arrowed line is a directed line segment in which one or both endpoints is tangentially part of a triangle that bisects the line.
arrowed line segment
sio:ArsenicAtom
arsenic atom
CHEBI:27563
sio:Article
An article is a publication that is stand-alone section of a larger work.
article
sio:AspectRatio
The aspect ratio of a geometric shape is the ratio of its sizes in different dimensions.
Aspect Ratio
aspect ratio
The aspect ratio of a geometric shape is the ratio of its sizes in different dimensions.
sio:Assay
bioassay
An assay is an investigative (analytic) procedure in laboratory medicine, pharmacology, environmental biology, and molecular biology for qualitatively assessing or quantitatively measuring the presence or amount or the functional activity of a target entity (the analyte) which can be a drug or biochemical substance or a cell in an organism or organic sample.
assay
sio:AssertionOvopub
An assertion ovopub is an ovopub that contains and links to an assertion subgraph with one or more statements that may be true or false, as well as statements describing its provenance.
assertion ovopub
sio:AssertionalQualifier
An assertional qualifier is the quality of affirmation, either being positive or negative.
assertional qualifier
2
sio:Association
An assocation is a relationship between two or more entities derived by some informational analysis.
association
sio:AstatineAtom
astatine atom
CHEBI:30415
sio:Atom
An atom is composed of a core of protons and/or neutrons which may be surrounded by a cloud of electrons.
atom
sio:Attribute
An attribute is a characteristic of some entity.
core
attribute
sio:AudioRecording
An audio recording is an electrical or mechanical inscription and re-creation of sound waves, such as spoken voice, singing, instrumental music, or sound effects.
audio recording
sio:AuthorContributionSection
An author contribution section is a document section that describes the contribution of the authors.
author contribution section
sio:AuthorList
an ordered list of authors.
author list
sio:AuthorRole
An author role is the role of an individual that creates a creative, written work.
Author
author role
sio:AuthorSection
An author section is a document section that lists the contributing authors.
author section
sio:Awe
awe is an emotion produced by that which is grand, sublime or powerful and is characterized by a combination of joy, fear and admiration/reverence/respect.
awe
sio:Axis
An axis is a line segment that is part of a statistical graph in which the
position along the line corresponds to a numeric or categorical value.
The value of a plotted geometric objects (e.g. point) can be obtained from the perpendicular projection of the position of the object onto the axis. Axis may also be associated with a textual description of what the values on the axis represents.
axis
The left vertical and bottom horizontal lines with tickmarks in
Graph 1 http://tinyurl.com/opwnvm
sio:Bar
A bar is a rectangle that is located in the plot of a statistical graph in which its length is proportional to the values that it represents.
bar
sio:BarGraph
A bar graph is a statistical graph with rectangular bars of lengths proportional to that value that they represent.
bar graph
Graphs 3,4,5 in http://tinyurl.com/opwnvm
sio:BariumAtom
barium atom
CHEBI:32594
sio:Base
A base is a molecular entity dissolved in a solvent that is capable of accepting a proton (Bronsted base) or forming a covalent bond with a hydron (Lewis base) .
base
sio:BasePair
A base pair is a weak molecular interaction composed of hydrogen bonds between nucleobases.
base pair
sio:BaseStack
A base stack is a stabilizing interaction of DNA and RNA between spatially adjacent nucleotides and possibly involving London dispersion, hydrophobic and electrostatic forces.
base stack
sio:Behaviour
Behaviour is the set of actions and mannerisms made by systems (biological or otherwise) in response to stimuli or inputs, whether internal or external, conscious or subconscious, overt or covert, and voluntary or involuntary.
behaviour+
core
behaviour
sio:Belief
A belief is a proposition that is believed to be true.
belief
sio:Bent
bent is the quality of a line being sharply curved or having an angle.
bent
sio:BerkeliumAtom
berkelium atom
CHEBI:33391
sio:BerylliumAtom
beryllium atom
CHEBI:30501
sio:BetaStrand
A beta strand is structural region of a protein that is characterized by a roughly planar sequence of amino acid residues forming hydrogen bonds between the N-O and the C=O of another part of the peptide
and having their side chains perpendicular to the planar axis.
beta strand
sio:BibliographySection
A bibliography section is a document section that is composed of a list of references used in the development of the work.
bibliography section
sio:Bill
A bill is proposed legislation under consideration by a legislature.
bill
2
sio:BinaryCompound
A binary compound is a mereological maximum sum of two kinds of weakly connected entities.
binary compound
sio:BinaryScale
A binary scale is a measurement scale that specifies a choice between two values.
binary scale
sio:BindingSite
A binding site is a molecular site which when occupied with particular ligands leads to structural transformations that initiatiate new moelcular processes.
binding site
sio:BiochemicalActivation
biochemical activation is a molecular interaction that increases the catalytic rate of the target enzyme.
biochemical activation
sio:BiochemicalInhibition
biochemical inhibition is a molecular interaction that decreases the catalytic rate of the target enzyme.
biochemical inhibition
sio:BiochemicalPathway
A biochemical pathway specifies a series of biochemical modifications and transformations towards achieving some biological outcome.
biochemical pathway
sio:BiochemicalReaction
A biochemical reaction is a biochemical process that involves the conversion of at least one chemical participant (target) into another (product) by an enzyme (agent).
biopax:BiochemicalReaction
biopax:Conversion
biochemical reaction
sio:BioinformaticData
bioinformatic data is data genereated or used for computer-based investigations of biological phenomena.
bioinformatic data
sio:Biologic
A biologic, also known as a biologic medical product, biological, or biopharmaceutical, is any pharmaceutical drug product manufactured in, extracted from, or semisynthesized from biological sources.
biologic
sio:BiologicalData
biological data is scientific data relevant to biology.
biological data
sio:BiologicalEntity
A biological entity is a heterogeneous substance that contains genomic material or is the product of a biological process.
chemical-
biological entity
sio:BiologicalFluid
A biological fluid is a fluid of biological origin.
biological fluid
sio:BiologicalQuality
A biological quality is a quality held by a biological entity.
biological quality
sio:BiologicalReproduction
biological reproduction is the biological process by which one or more biological organisms are produced from their "parents".
biological reproduction
sio:BiologicalSex
biological sex is the quality of a biological organism based on reproductive function or organs.
biological sex
sio:BiomolecularStructureDescriptor
A biomolecular structure descriptor is structure description for organic compounds.
biomolecular structure descriptor
sio:Biopolymer
A biopolymer is an organic polymer that are typically produced by the cells of living organisms.
biopolymer
sio:BiopolymerSequence
A sequence is a primary structure descriptor in which each of the letters in the string represents a monomeric unit (residue) in which adjacent letters represent the connectivity between the monomeric units.
biopolymer sequence
sio:Biosynthesis
biosynthesis is the synthesis of an organic compound in a living organism, usually aided by enzymes.
biosynthesis
sio:Birthing
birthing is the process by which a biological organism is brought into existence.
birthing
sio:BismuthAtom
bismuth atom
CHEBI:33301
sio:BlockHistogram
A block histogram contains an x-axis that is divided into bins which correspond to value ranges. Each item in the data set is drawn as a rectangular block, and the blocks are piled into the bins to show how many values in each range.
block histogram
sio:Blog
A blog is a publication accessible at some website and is typically about various experiences.
blog
sio:BohriumAtom
bohrium atom
CHEBI:33355
sio:Boldness
boldness is the trait of being willing to undertake things that involve risk or danger.
boldness
sio:Book
A book is a publication composed of a large number of entries.
book
sio:BookSection
book section
sio:BookSeries
A book series is a collection of books that have been sequentially published.
book series
sio:BookVolume
A book volume is a book that is part of a collection.
book volume
sio:Booklet
A booklet is a document that lacks a named publisher or sponsoring institution.
booklet
sio:Boredom
boredom is the emotion experience by those not interested in their surroundings or available activities.
boredom
sio:BoronAtom
boron atom
CHEBI:27560
sio:BottomValueAxis
A bottom value axis is a value axis that is spatially positioned to the bottom of the plot area.
bottom value axis
sio:Boxplot
A boxplot (box-and-whisker diagram) is a convenient way of graphically depicting groups of numerical data through their five-number summaries: the smallest observation (sample minimum), lower quartile (Q1), median (Q2), upper quartile (Q3), and largest observation (sample maximum).
boxplot
sio:BrandName
A brand name is a trademarked and marketed name of a product.
brand name
sio:Brief
A brief is a written legal document used in various legal adversarial systems that is presented to a court arguing why one party to a particular case should prevail.
brief
sio:BromineAtom
bromine atom
CHEBI:22927
sio:BrownianMotion
Brownian motion is the seemlingly random movement of particles suspended in a fluid.
brownian motion
sio:BubbleChart
A bubble chart contains circles whose area corresponds to a value.
bubble chart
sio:Buffer
A buffer is a dissolved chemical substance that resists change in pH upon addition of small amounts of acid or base.
buffer
sio:BufferRole
A buffer role is the role of a chemical substance which maintains a pH at a near constant value.
buffer role
sio:CadmiumAtom
cadmium atom
CHEBI:22977
sio:CaesiumAtom
caesium atom
CHEBI:30514
sio:CalciumAtom
calcium atom
CHEBI:22984
sio:CaliforniumAtom
californium atom
CHEBI:33392
sio:Cancelled
cancelled is a process status in which the process, while planned to occur, will not occur.
cancelled
sio:Capability
A capability is a realizable entity whose basis lies in one or more parts or qualities and reflects possibility of an entity to behave in a specified way under certain conditions or in response to a certain stimulus (trigger).
capability+
core
capability
2
sio:Carbohydrate
oligosaccharide
saccharide
a carbohydrate is an organic molecule composed of two or more monosaccharides.
carbohydrate
sio:CarbohydrateResidue
A carbohydrate residue is a part of a molecule that was derived from a monosaccharide molecule.
carbohydrate residue
sio:CarbonAllotrope
A carbon allotrope is a chemical substance composed of carbon.
carbon allotrope
sio:CarbonAtom
carbon atom
CHEBI:27594
sio:CarbonNanofoam
carbon nanofoam is an allotrope of carbon that consists of a low-density cluster-assembly of carbon atoms strung together in a loose three-dimensional web. Each cluster is about 6 nanometers wide and consists of about 4000 carbon atoms linked in graphite-like sheets that are given negative curvature by the inclusion of heptagons among the regular hexagonal pattern.
carbon nanofoam
sio:CartesianCoordinate
A Cartesian coordinate is the signed distance of a point to some referent line.
cartesian coordinate
sio:CartesianCoordinateAxis
A Cartesian coordinate axis is an axis whose behavior follows that of a Cartesian coordinate system.
Cartesian coordinate axis
sio:CartesianCoordinateSystem
A Cartesian coordinate system specifies each point uniquely in a plane by a pair of numerical coordinates, which are the signed distances from the point to two fixed perpendicular directed lines, measured in the same unit of length.
cartesian coordinate system
sio:Catabolism
Anabolism is the set of metabolic processes that take apart larger chemical entities units into smaller chemical entities.
catabolism
sio:Catalog
registry
A catalog is a systemic collection of items of the same type.
catalog
sio:Catalyst
A catalyst is a molecule that has the capability to reduce the activation energy of a reaction and hence increase the overall rate of reaction.
catalyst
sio:CatalyticRole
The role of a chemical participant that serves to increase the rate of reaction by lowering the activiation energy.
catalytic role
sio:CatalyzedReaction
A catalyzed reaction is a chemical reaction that is facilitated by a catalyst.
catalyzed reaction
sio:Category
A category is a class of entities having particular shared characteristics.
category
sio:CategoryAxis
A category axis is an axis in which the position along the line is partioned into categories.
category axis
The horizontal axis corresponding to months of the year in graph 4
of http://tinyurl.com/opwnvm
sio:Cation
An anion is an atom or molecule with a net positive electrical charge.
cation
sio:CationPiInteraction
A cation pi interaction is an ionic interaction between the localized negative charge of π orbital electrons, located above and below the plane of an aromatic ring, and a positive charge.
cation pi interaction
sio:Cell
A cell is a biological entity that is contained by a plasma membrane.
cell
sio:CellLine
A cell line is a collection of genetically identifical cells.
cell line
sio:Cellinformational
The minimal unit of a cellular automaton that can change state and has an associated behavior.
cell (informational)
sio:CellularOrganism
A cellular organism is an organism that contains one or more cells.
cellular organism
sio:CellularPhoneNumber
a cellular phone number is a number to connect to a mobile device
cellular phone number
sio:CellularQuality
cellular quality is the quality of a cell
cellular quality
sio:CenterOfMass
The center of mass (aka barycenter) is the weighted average location of all the mass in a body or group of bodies.
center of mass
sio:CentralityMeasure
A central tendency measure is a central value or a typical value for a probability distribution.
centrality measure
sio:CentrifugationPellet
A centrifugation pellet is a solid substance that forms as a result of compaction by a centrifuge.
centrifugation pellet
sio:CentrifugationSubstance
A centrifugation substance is a substance that is the target or product of centrifugation.
centrifugation substance
sio:Century
A century is a period of one hundred years.
century
sio:CeriumAtom
cerium atom
CHEBI:33369
sio:Chaoite
chaoite is an allotrope of carbon that is slightly harder than graphite with a reflection colour of grey to white.
chaoite
sio:Chapter
A chapter is a document section of a book or thesis.
Chapter
chapter
sio:Character
A character is a language symbol used to construct words.
character
sio:CharacterPosition
character offset
The ordinal position of a character in a sequence of characters.
character position
sio:ChargeQuality
charge quality is the quality pertaining to electric charge.
charge quality
sio:Charged
The quality of having a charge.
charged
sio:Chart
A chart is a figure that displays the relationship among tabular numeric data, functions or some kinds of qualitative structures.
chart
sio:Chemical-diseaseAssociation
A chemical-disease association is an association between a chemical and a disease.
chemical-disease association
sio:Chemical-geneAssocation
a chemical-gene assocation is an assocation between a chemical and a gene.
chemical-gene assocation
sio:Chemical-pathwayAssociation
drug-pathway association
a chemical-pathway association is an association between a chemical and a pathway.
chemical-pathway association
sio:ChemicalComplex
A chemical complex is a chemical substance composed of weakly connected molecules and ions in a known stoichiometry.
chemical complex
sio:ChemicalData
A chemical datum is a scientific data item which conforms to some specification, either for how it is calculated or for how it is measured, and is commonly used in the domain of chemistry to name and differentiate different numeric properties (both calculated and measured) which are about chemical entities.
chemical data
CHEMINF:000123
sio:ChemicalDegradationPathway
A chemical degradation pathway is a pathway involved in the disassembly of a chemical.
chemical degradation pathway
sio:ChemicalDestruction
chemical destruction is destruction of a chemical entity to its chemical constituents through one ormore chemical interactions or reactions.
chemical destruction
sio:ChemicalEffect
A chemical effect is a chemical interaction in which a chemical elicits a marked characteristic of a biological system.
chemical effect
sio:ChemicalElement
A chemical element is a (effectively) homogeneous substance composed of one type of atom.
chemical element
sio:ChemicalEntity
A chemical entity is a material entity that pertains to chemistry.
CHEBI:23367
chemical+
chemical entity
atom, ion, molecule, chemical substance,
sio:ChemicalEntityRole
A chemical role is a processual role held by a chemical entity.
chemical entity role
sio:ChemicalExposure
chemical exposure is a process to expose one or more individuals to a chemical substance.
chemical exposure
sio:ChemicalFunctionalGroup
chemical group
A chemical functional group is a submolecule that confers specific chemical properties.
chemical functional group
sio:ChemicalIdentifier
A chemical identifier is an identifier for a chemical entity
chemical identifier
sio:ChemicalInteraction
A chemical interaction is a biochemical process in which chemical entities interact through some set of attractive forces.
biopax:Interaction
chemical interaction
sio:ChemicalNotation
a notation to describe a chemical entity
chemical notation
sio:ChemicalQuality
chemical quality is the quality of a chemical entity.
chemical quality
sio:ChemicalReaction
A chemical reaction is a process that leads to the transformation of one set of chemical substances to another.
chemical reaction
sio:ChemicalReactionPathway
A chemical reaction pathway specifies a series of chemical reactions towards producing some chemical product.
chemical reaction pathway
sio:ChemicalSalt
salt
a chemical salt is a heterogenous substance composed of an ionic assembly of cations and anions.
chemical salt
sio:ChemicalStructure
chemical structure is the structure of a chemical entity in terms of its molecular geometry and electronic structure.
chemical structure
sio:ChemicalSubstance
mixture
A chemical substance is a chemical entity composed of two or more weakly (non-covalently) interacting chemical entities.
chemical substance
CHEMINF:440533
sio:ChemicalSubstanceRole
A chemical substance role is a chemical entity role held by a chemical substance.
chemical substance role
sio:ChemicalSynthesis
chemical synthesis is synthesis of a chemical entity from physical precursors through one or more chemical interactions or reactions.
chemical synthesis
sio:ChemicalSynthesisPathway
A chemical synthesis pathway is a pathway involved in the assembly of a chemical.
chemical synthesis pathway
sio:ChemicalTransport
chemical transport is the directed movement of a chemical entity by some agent (e.g. transporter).
biopax:Transport
chemical transport
sio:ChlorineAtom
chlorine atom
CHEBI:23116
sio:ChromiumAtom
chromium atom
CHEBI:28073
sio:Chromosome
A chromosome is a molecular complex of circular or linear DNA and bound proteins.
chromosome
sio:CircularlyHelical
a circularly helical quality is the quality of a helix that is connected in a circle or loop.
circularly helical
sio:Circumference
circumference is the length of the outline of a circle or ellipse. it is defined as c = 2*pi*r, where r is the radius.
circumference
sio:CisRegulatoryElement
A cisregulatory element is a DNA sequence located on the same DNA strand or chromosome as the gene whose expression it affects.
cis regulatory element
sio:Citation
A citation is a textual entity which denotes a source described in the bibliography or reference section of a document.
Citation Type
citation
sio:City
A city is a relatively large and permanent settlement.
city
sio:Class
A class is a collection of sets which can be unambiguously defined by a property that all its members share.
class
sio:Clause
A clause consists of a subject and a predicate.
clause
sio:ClinicalTrial
A clinical trial is an intervention trial to determine the safety and efficacy of medical interventions (e.g., drugs, diagnostics, devices, therapy protocols).
clinical trial
sio:ClosedInterval
A closed interval is an interval that includes its endpoints, and is denoted with square brackets.
closed interval
[0,1] is a closed interval that is greater than or equal to 0 and less than or equal to 1.
sio:Co-enzymeRole
A co-factor role in which the chemical entity is modified during catalysis and must be regenerated.
co-enzyme role
sio:Co-substrateRole
A co-enzyme role of a chemical entity that is transiently associated, and is regenerated in a separate reaction.
co-substrate role
sio:CobaltAtom
cobalt atom
CHEBI:27638
sio:CodingFrameOffset
a coding frame offset is a numeric value that indicates the number of bases from a reference start codon position.
coding frame offset
sio:CodingSequence
a coding sequence is a sequence of nucleotides which encode a RNA or protein product..
coding sequence
sio:CofactorRole
The role of a chemical entity involved in the mechanism for enzyme-mediated catalysis.
cofactor role
sio:Collection
A collection is a set for which there exists at least one member, although any member need not to exist at any point in the collection's existence.
collection
sio:CollectionItem
a collection item is an item in a collection.
collection item
sio:CollectionOf3dMolecularStructureModels
A collection of 3D molecular structure models is just that.
collection of 3d molecular structure models
2
sio:CollectionOfDocuments
A collection of documents is a non-zero set of documents.
http://purl.org/ontology/bibo/Collection
collection of documents
sio:CollectionOfPoints
A collection of points is a geometric entity that contains a non-zero set of geometric points.
collection of points
sio:CollectionOvopub
A collection ovopub is an ovopub that contains and links to one or more assertion subgraphs and/or ovopubs, as well as statements describing its provenance. It is used to share a specific set of items or restrict a search to the resources contained therein.
collection ovopub
sio:Collective
group
A collective is a group of entities that share or are motivated by at least one common issue or interest, or work together on a specific project(s) to achieve a common objective.
collective
0
sio:Column
A column is a vertical sequence of cells in a cellular automata.
column
sio:Comment
A comment is a verbal or written remark often related to an added piece of information, or an observation or statement.
comment
sio:CommonName
A common name is a name that is commonly used.
common name
sio:Communicating
communication
communicating is the process of conveying information through the exchange of thoughts, messages, or information, as by speech, visuals, signals, writing, or behaviour.
communicating
sio:CommunicationDevice
A communication device is a device that facilitates the transmission of information through encoded in an audio or digital signal between a sender and a receiver.
communication device
sio:Community
A community is a sizeable social unit that shares common values.
community
sio:ComparativeRole
A comparative role is an abstract role which holds by comparing some attribute of another object of reference.
comparative role
sio:Comparing
comparison
comparing is the process of examining a set of objects and determining their equality or inequality based on one or more features.
comparing
sio:CompleteCharge
A complete charge is a charge where the value of the charge is a multiple of 1.
complete charge
sio:Completed
completed is that status of a process that successfully unfolds.
completed
sio:CompletelyQuantifier
completely quantifier
sio:CompositionalQuality
composition quality is a quality that describes its composition or anatomy.
compositional quality
sio:ComputationalEntity
A computational entity is an information content entity operated on using some computational system.
computational entity
sio:Concentration
concentration is the amount of substance per unit volume of a solution
concentration
sio:Concept
A concept is term that refers to a generalization of a set of attributes or entities.
concept
sio:Conclusion
A conclusion is a proposition which is reached after considering the evidence, arguments or premises.
conclusion
sio:ConferenceProceedings
A conference proceedings is a book composed of papers presented at a conference.
conference proceedings
sio:Conjunctionand
AND is a logical operator that has the value true if both of its operands are true, otherwise a value of false.
conjunction (and)
sio:Consensus
consensus is an acceptable resolution, one that can be supported, even if not the preferred outcome for each individual.
consensus
sio:Consonant
A consonant is a verbal entity of language that is articulated with complete or partial closure of the vocal tract.
consonant
sio:ContainmentQuality
a containment quality is a quality of being able to contain another entity.
containment quality
sio:Contempt
contempt is disgust towards a lower status individual.
contempt
sio:Contentment
contentment is an emotion characterized by acknowledgement and satisfaction of the current state of affairs.
contentment
sio:ControlGroup
A control group is a group of individuals that are not subject to an intervention of interest, but rather serve as a baseline to compare the outcomes in the intervention group.
control group
sio:ControlRole
A control role is the role of an individual that is part of a study, but is not subject to the intervention that is to be tested.
control role
sio:ControlVariable
controlled variable
extraneous variable
A control variable that is believed to alter the dependent or independent variables, but may not actually be the focus of the experiment. So that variable will be kept constant or monitored to try to minimise its effect on the experiment.
control variable
sio:ControlledObservationalCohortStudy
In a controlled observational cohort study, two groups of subjects are selected from two populations that are thought to differ in only one characteristic. The groups of subjects are studied for a specific period and contrasted at the end of the study period.
controlled observational cohort study
sio:Conversing
conversing a form of interactive, spontaneous communication between two or more agents who are following rules of etiquette.
conversing
sio:Coordinate
A coordinate is a measurement of position in n-dimensional space.
coordinate
sio:CoordinateSystem
A coordinate system is a specification for spatial location that uses a set of numbers, or coordinates, to uniquely determine the position of a point or other geometric element.
coordinate system
sio:CoperniciumAtom
copernicium atom
CHEBI:33517
sio:CopperAtom
copper atom
CHEBI:28694
sio:CopyNumberVariation
CNV
copy number variation refers to the number of deletions/duplications of a DNA region as compared to some reference state.
copy number variation
sio:CopyrightSection
A copyright section is a document section that contains a notice of copyright.
copyright section
sio:Corporation
A corporation is an organization that is granted a charter recognizing it as a separate legal entity.
corporation
sio:Correlation
A correlation is a statistical relationship involving dependence between two random variables or datasets.
correlation
sio:CorrespondenceSection
A correspondence section is a document section that contains the details for contacting the corresponding author.
correspondence section
sio:Count
The number of elements of a finite set of objects.
count
sio:Count
sio:Country
A country is a region legally identified as a distinct entity in political geography.
country
2
sio:CovalentBond
A covalent bond is a strong submolecular interaction between atoms.
covalent bond
CHEMINF:000063
sio:Creating
creation
development
formulation
production
synthesis
creating is the process in which an entity comes into existence.
creating
sio:Criterion
A criterion is a specification to describe properties used for evaluation.
criterion
sio:CrystalStructure
A crystal structure is the arrangement of atoms or molecules in a crystalline liquid or solid.
crystal structure
sio:Curiosity
curiosity is the strong desire to know or learn something.
curiosity
sio:CuriumAtom
curium atom
CHEBI:33390
sio:Curvature
curvature is a quality of a bearer that relates to the presence of curves, bends, or angles.
curvature
sio:Curve
A curve is a geometric entity that may be located in n-dimensional spatial region whose extension may be n-dimensional, is composed of at least two fully connected points and does not intersect itself.
curve
sio:CurveSegment
A curve segment is a part of a curve that consists of at least three points.
curve segment
sio:Curved
curved is the quality of a line that deviates from straightness in a smooth, continuous fashion.
curved
sio:CylindricalCoordinateSystem
A cylindrical coordinate system is a three-dimensional coordinate system that specifies point positions by the distance from a chosen reference axis, the direction from the axis relative to a chosen reference direction, and the distance from a chosen reference plane perpendicular to the axis.
cylindrical coordinate system
sio:DarmstadtiumAtom
darmstadtium atom
CHEBI:33367
sio:DataAnalysis
data analysis is a process of inspecting, cleaning, transforming, and modeling data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making.
data analysis
sio:DataCollection
data collection is the process of acquiring information.
data collection
sio:DataCollectionDevice
A data collection device is a device that collects information about one or more objects.
data collection device
sio:DataItem
A data item consists of information that has been collected/generated towards some purpose.
data item
sio:DataPoint
A data point is a point that which corresponds to the projection of the values of measurement data against the axes of a statistical graph.
data point
sio:DataSeries
A data series is a data set composed of related values displayed in a statistical graph.
data series
Example: The two series that correspond to "Seasonally adjusted" and "Trend" are composed of the seasonally adjusted value of permits in each month and values from a trend derived from some mathematical tranformation across those values, respectively, in Graph 1 of http://tinyurl.com/opwnvm
sio:DataStorageDevice
A data storage device is a device that is capable of storing information.
data storage device
sio:DataTransformation
data transformation is the process of applying an algorithmic procedure to some input data and producing some output data.
data transformation
sio:Database
A database is a set of tables.
database
sio:DatabaseColumn
A database collumn is a column in a database table.
database column
sio:DatabaseCross-reference
dbxref
A database cross-reference is an association between one data item and another.
database cross-reference
sio:DatabaseEntry
database record
A database entry is a single, implicitly structured data item in a table.
database entry
sio:DatabaseKey
A database key is an informational entity whose value is constructed from one or more database columns.
database key
sio:DatabaseRow
A database row is a row that is part of a database table.
database row
sio:DatabaseTable
A database table is a set of named columns with zero or more rows composed of cells that contain column values and is part of a database.
database table
sio:Dataset
data set
A dataset is a data item that is a collection of data items.
http://www.w3.org/ns/dcat#Dataset
dataset
sio:DateOfDatabaseSubmission
A date of database submission refers to the moment in time in which some information was submitted/received to a database system.
date of database submission
sio:DateOfIssue
the date at which an information content entity was made public.
date of issue
sio:Dead
dead is the quality of an object in which there is a cessation of all biological functions.
dead
sio:DecimalScale
A decimal scale of measurement is one that only specifies decimal values.
decimal scale
sio:DecompositionReaction
A decomposition reaction is an inorganic reaction in which molecule is fragmented into submolecules or atoms.
decomposition reaction
sio:DecreaseInNumberOfObjectsProduced
An decrease in the number of objects produced is the negative value of a difference in number of objects produced.
decrease in number of objects produced
sio:Decreased
A quality that has a value that is decreased compared to normal or average.
PATO:0002301
decreased
sio:DecreasedChemicalDestruction
decreased chemical destruction is a process in which there is a decrease in the amount of chemical destroyed relative to some reference process
decreased chemical destruction
sio:DecreasedDurationOfProcessFromIncreasedRegulation
decreased duration of process from increased regulation is a process in which the duration of the target process is decreased as a result of increased regulation.
decreased duration of process from increased regulation
sio:DecreasedFrequencyOfProcessFromIncreasedRegulation
The increase of regulation leads to a decreased occurence of processes of the target process type.
decreased frequency of process from increased regulation
sio:DecreasedMolecularDegradationFromDecreasedRegulation
A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation.
decreased molecular degradation from decreased regulation
sio:DecreasedMolecularDegradationFromIncreasedRegulation
A process that decreases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation.
decreased molecular degradation from increased regulation
sio:DecreasedMolecularProductionFromDecreasedRegulation
A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation.
decreased molecular production from decreased regulation
sio:DecreasedMolecularProductionFromIncreasedRegulation
A process that decreases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation.
decreased molecular production from increased regulation
sio:DecreasedObjectConsumptionFromIncreasedRegulation
increased regulation leads to an decrease in the consumption of an object of specified type.
decreased object consumption from increased regulation
sio:DecreasedObjectProductionFromIncreasedRegulation
increased regulation leads to a decrease in the number of target objects of a specified type.
decreased object production from increased regulation
sio:DecreasedSpatialExtentOfProcessFromDecreasedRegulation
The increase of regulation leads to a decreased spatial extent of the target process.
decreased spatial extent of process from decreased regulation
sio:DecreasingLine
An decreasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is negative.
decreasing line
sio:DeductiveArgument
A deductive argument is an argument that asserts that the truth of the conclusion is a logical consequence of the premises.
deductive argument
sio:DefaultParameter
A default parameter is a parameter which has a default value.
default parameter
sio:Definition
A definition is a description that succintly characterizes an entity.
definition
sio:DeletionVariantRole
A deletion variant role is the role of an sequence that lacks a sub-sequence relative to the frame of reference.
deletion variant role
sio:Dendrogram
A dendrogram is a tree diagram used to illustrate the arrangement of the clusters produced by hierarchical clustering.
dendrogram
sio:Density
Density (volumetric mass density) is the quantity of mass per unit volume of a substance.
Density
density
sio:Density
sio:DentistRole
A dentist role is the role of an individual that that specializes in the diagnosis, prevention, and treatment of diseases and conditions of the oral cavity.
dentist role
2
sio:DeoxyribonucleicAcid
A deoxyribonucleic acid is an organic polymer composed of a sequence of deoxyribonucleotide residues.
deoxyribonucleic acid
sio:DeoxyribonucleicAcidPrimer
A deoxyribonucleic acid primer is a deoxyribonucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation.
deoxyribonucleic acid primer
sio:DeoxyribonucleicAcidSequence
DNA sequence
A deoxyribonucleic acid sequence is a symbolic representation of the sequence of deoxyribonucleic acid residues in a deoxyribonucleic acid.
deoxyribonucleic acid sequence
sio:DeoxyribonucleicAcidTemplate
A deoxyribonucleic acid template is a deoxyribonucleic acid that provides the template to synthesize a complementary strand of DNA through transcription.
deoxyribonucleic acid template
sio:DeoxyribonucleotideResidue
A deoxyribonucleotide residue is a part of a molecule that derives from a deoxyribonucleotide.
deoxyribonucleotide residue
sio:DepartmentChairRole
A department chain role is the role of an individual that heads a department at a academic organization.
department chair role
sio:DependentVariable
A dependent variable is one whose value changes as a consequence of changes in other values in the system.
dependent variable
sio:Depression
depressed
depression is an unpleasant emotion linked to aversion to activity that can affect a person's thoughts, behavior, feelings and physical well-being. Depressed individuals may feel sad, anxious, empty, hopeless, worried, helpless, worthless, guilty, irritable, or restless.
depression
sio:Depth
depth is the dimensional extent into a plane of a 3D projection of the object.
Depth
depth
sio:Description
//Description
A description is language entity in which elements of a language (formal or natural) are used to characterize an entity.
Description
description
sio:Descriptor
A descriptor (index term, subject term, subject heading) is a term that captures the essence of the topic of a document.
descriptor
sio:Design
A specification of an object, manifested by an agent, intended to accomplish goals, in a particular environment, using a set of primitive components, satisfying a set of requirements, subject to constraints.
design
sio:DesignSpecification
A design specification is a specification that provides precise and explicit information about the requirements for a product design.
design specification
sio:Desire
desire is a strong emotion of wanting to have something or wishing for something to happen.
desire
sio:Despair
despair is depression, hopelessness or lack of hope.
despair
sio:Destroying
destruction
destroying is a process in which something is broken down and/or ceases to exist.
destroying
sio:Device
A device is usually a constructed tool.
device
sio:Diagnosis
A diagnosis is the result of a medical investigation to identify a disorder from its signs and symptoms.
diagnosis
sio:DiagnosticOpinion
A diagnostic opinion is an opinion resulting from a medical diagnostic procedure.
diagnostic opinion
sio:DiagnosticTest
clinical laboratory test
A diagnostic test is a procedure performed to confirm, or determine the presence of disease in an individual suspected of having the disease, usually following the report of symptoms, or based on the results of other medical tests.
diagnostic test
sio:Diamond
diamond is a carbon allotrope in which each carbon atom in diamond is covalently bonded to four other carbons in a tetrahedron. These tetrahedrons together form a 3-dimensional network of puckered six-membered rings of atoms.
diamond
sio:Diary
A diary is a document which describes day-to-day experiences.
diary
sio:Diastereomer
A diastereomer is a stereoisomer that is not a mirror image of its isomer.
diastereomer
sio:DifferenceInNumberOfObjectsProduced
A difference in number of objects produced is a count of the number of objects produced with respect to a second variable (space, time, etc)
difference in number of objects produced
sio:DifferentialDiagnosis
A differential diagnosis (sometimes abbreviated DDx, ddx, DD, D/Dx, or ΔΔ) is a systematic diagnostic method used to identify the presence of an entity where multiple alternatives are possible (and the process may be termed differential diagnostic procedure), and may also refer to any of the included candidate alternatives (which may also be termed candidate condition).
differential diagnosis
sio:DifferentialEquation
A differential equation is a mathematical equation for an unknown function of one or several variables that relates the values of the function itself and its derivatives of various orders.
differential equation
sio:DifferentialGeneExpressionRatio
A differential gene expression ratio is the ratio of gene expression values from a test sample compared to a control sample.
differential gene expression ratio
sio:Diffusion
diffusion is motion of particles at temperatures above absolute zero.
diffusion
sio:DiffusionEquation
A diffusion equation describes density fluctuations in a material undergoing diffusion.
diffusion equation
sio:DimensionalQuantity
A dimensional quantity is a quantity that has an associated unit.
Dimensional Quantity
dimensional quantity
A dimensional quantity is a quantity that has an associated unit.
https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-release.owl
sio:DimensionlessQuantity
A dimensionless quantity is a quantity that has no associated unit.
dimensionless quantity
sio:Dipole-dipoleInteraction
A dipole-dipole interaction is a weak submolecular interaction between strongly electronegative atoms.
dipole-dipole interaction
sio:DirectedAcyclicGraph
dag
a directed acyclic graph or DAG is a network digram that contains directed edges in which nodes may have multiple parents, but there are no cycles.
directed acyclic graph
1
1
sio:DirectedLineSegment
A directed line segment is a line segment that is contained by an ordered pair
of endpoints (a start point and an endpoint).
directed line segment
sio:DisGeNETDiseaseSpecificity
DisGeNET Disease specificity is a measure of disease coverage. It is calculated from the negative base 2 log of the ratio of number of diseases associated to the total number of diseases.
The measure is described here: http://www.disgenet.org/web/DisGeNET/menu/dbinfo#specificity
DisGeNET disease specificity
sio:DisGeNETPleiotropyIndex
The DisGeNET pleiotropy index is a measure of specificity as it pertains to classes of disease. The disease pleotropy index is computed from the ratio of the number of disease classes associated with an entity over the total number of disease classes multplied by 100.
The measure is defined here: http://www.disgenet.org/web/DisGeNET/menu/dbinfo#pleiotropy
DisGeNET Pleiotropy Index
sio:Disagreement
agreement is the result of consensus decision making when members of the group do not all agree.
disagreement
sio:Disappointment
disappointed
disappointing
disappointment is the feeling of dissatisfaction that follows the failure of expectations or hopes to manifest.
disappointment
sio:Discouragement
discouraged
Discouragement is the emtion of having lost confidence or enthusiasm.
discouragement
sio:DiscussionSection
The discussion section is a document section containing a summary of the findings, a reflection on the significance of findings, comparison with related work, among others.
discussion section
sio:Disease
disease is the outward manifestation of one or more disorders.
disease
sio:Disgust
Disgust is a feeling of revulsion or profound disapproval aroused by something unpleasant or offensive.
disgust
sio:Disjunctionor
OR is a logical operator that results in true whenever one or more of its operands are true.
disjunction (or)
sio:Disordered
disordered is a structural quality in which the parts of an object are non-rigid.
disordered
sio:DisplacementReaction
A displacement reaction is an inorganic reaction in which a elementary substance displaces and sets free a constituent atom from a molecule.
displacement reaction
sio:Disposition
A disposition is the tendency of a capability to be exhibited under certain conditions or in response to a certain stimulus (trigger).
core
disposition
solubility (to dissolve when put in fluid); fragility (disposition to break when dropped)
sio:DissatisfiedQualifier
dissatisfied qualifier
sio:DisulfideBond
A disulfide bond is a bond between two sulfur atoms.
disulfide bond
sio:DnaGene
A gene that is located on DNA.
dna gene
sio:Doctor
A doctor is an individual who practices medicine, which is concerned with promoting, maintaining or restoring human health through the study, diagnosis, and treatment of disease, injury, and other physical and mental impairments.
doctor
sio:DoctorRole
physician
A doctor role is the role of an individual who practices medicine, which is concerned with promoting, maintaining or restoring human health through the study, diagnosis, and treatment of disease, injury, and other physical and mental impairments.
doctor role
sio:Document
A document is a bounded physical or digital representation of a body of information designed with the capacity (and usually intent) to communicate.
document
sio:DocumentComponent
A bibliographic attribute is an attribute related to publications.
document component
sio:DocumentSection
A document section is a component of a document.
document section
sio:DocumentTitle
A document title is a textual entity that summarizes the topic of the document in one sentence.
document title
sio:DocumentVersion
A document version is a version of a work in some sequence of derivative works.
document version
sio:Dose
A dose is the quantity of a chemical substance administered to a biological system.
dose
2
sio:DoubleArrowedLineSegment
A double arrowed line is an arrowed line in which both terminal points are tangentially part of different triangles that bisect the line.
double arrowed line segment
sio:DoubleBond
A double bond is a covalent bond between a pair of atoms in which two pairs of electrons are shared.
double bond
sio:DoubleDisplacementReaction
A double displacement reaction is a displacement reaction in which two molecules swap ions, effectively displacing each other to form two new molecules.
double displacement reaction
2
sio:DoubleStrandedDNA
double stranded nucleic acid is a molecular complex composed of two weakly connected deoxyribonucleic acids.
double stranded DNA
2
sio:DoubleStrandedNucleicAcid
double stranded nucleic acid is a molecular complex composed of two weakly connected nucleic acids.
double stranded nucleic acid
2
sio:DoubleStrandedRNA
double stranded nucleic acid is a molecular complex composed of two weakly connected ribonucleic acids.
double stranded RNA
sio:Draft
drafted
draft is the quality of text that has not yet complete.
draft
sio:Dread
dread is the instense negative emotion that induces fear and apprehension.
dread
sio:DropLine
A drop line is a statistical graph line that vertically or horizontally connects a data series line with a value axis in a statistical graph.
drop line
sio:Drug
A drug is a chemical substance that contains one or more active ingredients that regulate one or more biological processes.
drug
2
sio:DrugDrugInteraction
A drug-drug interaction is an interaction in which two drugs interact in such a way to produce a non-additive biological response.
drug drug interaction
sio:DrugRegulatoryAuthority
A drug regulatory authority is a regulatory authority which acts to control what substances may be used to treat individuals.
drug regulatory authority
sio:DubniumAtom
dubnium atom
CHEBI:33349
sio:Duplicate
a duplicate is an object that is an exact copy of another item
duplicate
sio:DuplicateRole
a duplicate role is a comparative role that holds when one item is an exact copy of another in a specific set.
duplicate role
sio:Dying
dying is a process in which a biological entity ceases to exist.
dying
sio:Dysfunction
dysfunction is a capability to act in a manner that is abnormal or opposite to the object's typical function.
dysfunction
sio:DysprosiumAtom
dysprosium atom
CHEBI:33377
sio:E.coli
Escherichia coli (e coli) is a Gram-negative, rod-shaped bacterium that is commonly found in the lower intestine of warm-blooded organisms.
e.coli
sio:Ecstasy
ecstacy is an emotion characterized by a heightened state of consciousness with total involvement of a subject.
ecstasy
sio:Edge
an edge is a line connecting two graph vertices.
edge
sio:EditedPublication
An edited publication is a publication that has been examined and potentially changed by an editor.
edited publication
sio:EditionNumber
An edition number is count of a literary work edited and published, as by a certain editor or in a certain manner including being printed during some interval of time.
Edition
edition number
sio:EditorReviewed
editor reviewed is the quality of a textual entity that has been examined and commented on by an editor.
editor reviewed
sio:EffectiveDose
effective dose is the amount of a substance required to produce an effect on a predefined percentage of a population.
effective dose
sio:EinsteiniumAtom
einsteinium atom
CHEBI:33393
sio:ElectronicStructure
electronic configuration
electronic structure is the electron configuration is the distribution of electrons of an atom or molecule (or other physical structure) in atomic or molecular orbitals.
electronic structure
the electron configuration of the neon atom is 1s2 2s2 2p6.
sio:ElectrophilicAdditionReaction
An electrophilic addition reaction is a polar addition reaction where a pi bond is removed by the creation of two new covalent bonds.
electrophilic addition reaction
sio:Email
Email message is a digital document that is composed of a header and a body and is transmitted using the SMTP protocol.
email
sio:EmailAddress
an email address is an identifier to send mail to particular electronic mailbox.
email address
sio:Embarassment
Embarrassment is the emotion of intense discomfort with oneself, experienced upon having a socially unacceptable act or condition witnessed by or revealed to other.
embarassment
sio:Emotion
An emotion is a process (experience) that arises internally or from an involuntary physiological response to a stimulus.
emotion++
emotion
sio:Empty
empty is the quality of not containing some thing
empty
0
sio:EmptySet
An empty set is a set for which there are exactly 0 members.
empty set
sio:Enantiomer
An enantiomer is a stereoisomer that is a mirror image of its isomer.
enantiomer
sio:EndDate
An end date is a time instant pertaining to date of the end of a process.
end date
sio:EndPosition
stop position
An end position is the distal position of an object relative to an origin in a linear system.
end position
sio:EndTime
An end time is a time instant pertaining to the time at which a process ends.
end time
sio:Endpoint
An endpoint is a terminal point that is the last of an ordered
pair of points.
endpoint
sio:Entity
Every thing is an entity.
core
entity
sio:Environment
An environment is a geographic region that hosts certain processes or objects.
environment
sio:Envy
envy is an emotion that occurs when a person lacks another's (perceived) superior quality, achievement or possession and wishes that the other lacked it.
envy
sio:Enzyme
An enzyme is a protein or protein complex that realizes its disposition to covalently modify some molecule during a chemical reaction.
enzyme
sio:Epimer
An epimer is a stereoisomer that differs in configuration at only one stereogenic center.
epimer
2
sio:EpimerAssociation
epimer association
sio:Equation
An equation is a mathematical statement that asserts the equality of two expressions.
equation
sio:ErbiumAtom
erbium atom
CHEBI:33379
sio:EthnicGroup
An ethnic group is a group of people whose members identify with each other through a common heritage, consisting of a common culture, including a shared language or dialect.
ethnic group
sio:Ethnicity
ethnicity is the biological quality of membership in a social group based on a common heritage.
ethnicity
sio:Euphoria
euphoria is an emotion characterized by intense feelings of well-being, elation, happiness, ecstasy, excitement, and joy.
euphoria
sio:EuropiumAtom
europium atom
CHEBI:32999
sio:EvaluationRole
An evaluation role is a processual role held by an entity during some evaluation.
evaluation role
sio:Evidence
evidence is the body of facts or information indicating whether a belief or proposition is true or valid.
evidence
sio:EvolutionaryLineage
evolutionary lineage is a sequence of species, that form a line of descent, each new species the direct result of speciation from an immediate ancestral species.
evolutionary lineage
sio:Evolving
evolving is a process that elicits change across successive generations in the inherited characteristics of biological populations.
evolving
sio:ExactCross-reference
An exact cross-reference is a database cross-reference in which one entity is equivalent to the other based on all the entitie's attributes (minus the source).
exact cross-reference
sio:ExcellentQuality
excellent quality
sio:Excerpt
An excerpt is a contiguous or discontiguous portion of a document.
excerpt
sio:Excitement
excitement is a positive emotion of feeling great enthusiasm and eagerness.
excitement
sio:ExclusionCriterion
An exclusion criterion is a criterion that must be absent to satistify the objective.
exclusion criterion
sio:ExclusiveDisjunctionxor
XOR, also called exclusive disjunction or (symbolized XOR, EOR, EXOR, or ⊕), is a type of logical disjunction on two operands that results in a value of true if exactly one of the operands has a value of true.
exclusive disjunction (xor)
sio:ExistenceQuality
existence quality is the quality of an entity that describe in what environment it is known to exist.
existence quality
sio:Exon
An exon is a nucleotide sequence encoded by a gene that remains present within the final mature RNA product of that gene after introns have been removed by RNA splicing.
exon
sio:ExpectedValue
An expected value (or e-value) is the weighted average of all possible values that a random variable can take on.
expected value
sio:Experiment
study
An experiment is an investigation that has the goal of verifying, falsifying, or establishing the validity of a hypothesis.
experiment
sio:ExperimentalProtocol
An experimental protocol is an action specification with respect to the design and implementation of experiments. In addition to providing a detailed set of procedures and lists of required equipment and instruments, experimental protocols often include information on safety precautions, the calculation of results and reporting standards, including statistical analysis and rules for predefining and documenting excluded data to avoid bias.
experimental protocol
false
sio:False
false is a truth value in that indicates that it is not true.
false
sio:Family
A group of people affiliated by consanguinity, affinity, or co-residence.
family
sio:FamilyHistory
family history is the systematic narrative and research of past events relating to a specific family, or specific families.
family history
sio:Fatal
fatal is a qualitative intensity value that is more intense than severe, leading to the death/non-functioning of a system.
fatal
sio:FaxNumber
a fax number is a number to connect to fax device
fax number
sio:Fear
Fear is a negative emotion induced by a perceived threat that induces one to hide or move quickly away from the location of the perceived threat.
fear
sio:Female
female is a biological sex of an individual with female sexual organs.
female
sio:FermiumAtom
fermium atom
CHEBI:33394
sio:Fictional
fictional is the quality of an entity that exists only in a creative work of fiction.
fictional
sio:Figure
diagram
A figure is a graphical entity which consists of a visual (n-dimentional) arrangement of information entities.
figure
sio:FigurePart
A figure part is a part of a figure.
figure part
sio:File
A file is an information-bearing object that contains a physical embodiment of some information using a particular character encoding.
http://www.w3.org/ns/dcat#Distribution
file
sio:Finalized
finalized is the quality of a textual entity that is in its final form.
finalized
sio:FirstName
A first name is a name that denotes a specific individual between members of a group of individuals, whose members usually share the same surname.
first name
sio:Fitness
fitness is the quality of an object with respect to some stated functions or evolutionary adaptation.
fitness
sio:Flowchart
A flowchart is a diagram that represents an algorithm or process, showing the steps as boxes of various kinds, and their order by connecting these with arrows.
flowchart
sio:FluorineAtom
fluorine atom
CHEBI:24061
sio:ForeignDatabaseKey
A foreign database key is a database key that refers to a key in some table.
foreign database key
sio:FormalSpecification
A formal specification is a mathematical description of software or hardware that may be used to develop an implementation.
formal specification
sio:FranciumAtom
francium atom
CHEBI:33323
sio:FreeRadicalAddition
A free radical addition is a non-polar addition reaction involving free radicals.
free radical addition
sio:Frequency
Frequency is the number of occurrences of a repeating event per unit time
Frequency
frequency
The rate of occurrence of some periodic event.
sio:Frustration
Frustration is an emotion that arises from the perceived resistance to the fulfillment of individual will.
frustration
sio:Full
full is the quality of contain an entity such that there is no more space for any additional entity.
full
sio:FullAgreement
full agreement is the result of consensus decision making when members of the group unanimously agree.
full agreement
sio:FullDisagreement
full agreement is the result of consensus decision making when members of the group unanimously disagree.
full disagreement
sio:Fullerene
fullerene is a carbon allotrope which take the form of a hollow sphere, ellipsoid, or tube.
fullerene
sio:Function
A function is a capability that satisfies some agentive objective, or (evolutionary) optimization.
core
function
sio:FunctionalRnaCodingGene
A gene that codes for a functional RNA molecule.
functional rna coding gene
sio:FunctionalSpecification
A functional specification is a specification that describes the characteristics of an object.
functional specification
sio:FusionGene-diseaseAssociation
A gene-disease association in which the fusion between two different genes (promotor and/or other coding DNA regions) is associated with the disease.
fusion gene-disease association
sio:GadoliniumAtom
gadolinium atom
CHEBI:33375
sio:GalliumAtom
gallium atom
CHEBI:49631
sio:GanttChart
A Gantt chart is a bar chart that illustrates a project schedule.
Gantt chart
sio:Gene
A gene is part of a nucleic acid that contains all the necessary elements to encode a functional transcript.
biopax:Gene
http://purl.obolibrary.org/obo/SO_0000704
gene
sio:Gene-diseaseAssociation
A gene-disease association is an association between a gene and a disease.
gene-disease association
sio:Gene-diseaseAssociationLinkedWithAlteredGeneExpression
A gene-disease association in which the disease phenotype is associated with an altered expression of the gene.
gene-disease association linked with altered gene expression
sio:Gene-diseaseAssociationLinkedWithCausalMutation
A gene-variant disease association in which a mutation in the gene/protein results in the development or maintenance of the disease.
gene-disease association linked with causal mutation
sio:Gene-diseaseAssociationLinkedWithChromosomalRearrangement
A gene-disease association in which the gene is included in a chromosomal rearrangement associated with a particular manifestation of the disease.
gene-disease association linked with chromosomal rearrangement
sio:Gene-diseaseAssociationLinkedWithGeneticVariation
gene variant-disease association
A gene-disease association in which a sequence variation (a mutation, a SNP) is associated with the disease.
gene-disease association linked with genetic variation
sio:Gene-diseaseAssociationLinkedWithGenomicAlterations
a gene-disease association that is linked with some genomic alteration
gene-disease association linked with genomic alterations
sio:Gene-diseaseAssociationLinkedWithGermlineCausalMutation
A gene-variant disease association in which a germline mutation in the gene/protein results in the development or maintenance of the disease, and it may be passed on to offspring.
gene-disease association linked with germline causal mutation
sio:Gene-diseaseAssociationLinkedWithGermlineModifyingMutation
A gene-variant disease association in which a germline mutation in the gene modifies the clinical presentation of the disease, and it may be passed on to offspring.
gene-disease association linked with germline modifying mutation
sio:Gene-diseaseAssociationLinkedWithModifyingMutation
A gene-disease association in which a gene mutation is known to modify the clinical presentation of the disease.
gene-disease association linked with modifying mutation
sio:Gene-diseaseAssociationLinkedWithPost-translationalModification
A gene-disease association in which the disease phenotype is associated with post-translational modifications in the protein product.
gene-disease association linked with post-translational modification
methylation or phosphorylation of protein product
sio:Gene-diseaseAssociationLinkedWithSomaticCausalMutation
A gene-variant disease association in which a somatic mutation in the gene/protein results in the development or maintenance of the disease, and it may not be passed on to offspring.
gene-disease association linked with somatic causal mutation
sio:Gene-diseaseAssociationLinkedWithSomaticModifyingMutation
A gene-variant disease association in which a somatic mutation in the gene modifies the clinical presentation of the disease, and it may not be passed on to offspring.
gene-disease association linked with somatic modifying mutation
sio:Gene-diseaseAssociationLinkedWithSusceptibilityMutation
A gene-disease association in which a germline mutation in the gene predisposes to the development of the disease, and it is necessary but not sufficient for the manifestation of the disease.
gene-disease association linked with susceptibility mutation
sio:Gene-diseaseBiomarkerAssociation
A gene-disease association in which the gene/protein is involved in the etiology or maintenance of the disease.
gene-disease biomarker association
sio:GeneComponent
A gene component is a component of a gene.
gene component
sio:GeneEnhancer
A gene enhancer is a short region of DNA that can be bound with proteins to enhance transcription levels of genes in a gene cluster.
gene enhancer
sio:GeneExpressionValue
A gene expression value is a measured value obtained from a gene expression experiment.
gene expression value
sio:GenePromoter
A gene promoter is a region of DNA that initiates transcription of a particular gene.
gene promoter
sio:GeneRegulatoryComponent
A gene regulatory component is a gene component that exerts a regulatory function.
gene regulatory component
sio:GeneSymbol
a gene symbol is a short name assigned to a gene.
gene symbol
sio:GenerationNumber
generation number is a count of the number of biological reproduction events elapsed from some starting reference point.
generation number
sio:GenericName
A generic name is the preferred name provided by manufacturer.
generic name
sio:GeneticData
genetic data is data pertaining to genetics.
genetic data
sio:GeneticPolymorphism
genetic polymorphism is the description of a difference in genetic composition at some location.
genetic polymorphism
sio:Genome
A genome is a collection of nucleic acids.
genome
sio:GenomicSequenceVariant
a genomic sequence variant is part of a nucleic acid which is compositionally different than another reference genomic part.
variant
genomic sequence variant
sio:Genotype
A genotype is a functional specification of a biological entity in terms of its genetic composition (or lack thereof).
genotype
sio:GeographicHeatmap
A geographic heatmap is a graphical representation of data over a geographic region where individual values are represented as colors.
geographic heatmap
sio:GeographicImage
A geographic image is a photograph of some geographical area.
geographic image
sio:GeographicPosition
A geographic position is the coordinate of an entity against some geographic coordinate system.
geographic position
sio:GeographicRegion
A geographic region is a spatial region whose boundaries are typically defined against some material frame of reference (like the earth).
geographic region
The spatial region occupied by the province of ontario; the spatial region occupied by a lake.
sio:GeolegalRegion
A geolegal region is a geographic region which has causal powers confered by a legal entity.
geolegal region
The 50 kph zones in Ottawa; the geographic region occupied by France.
sio:GeometricEntity
A geometric entity is an information content entity that pertains to the structure and topology of a space.
geometry+
geometric entity
sio:GeopoliticalRegion
a geopolitical region is a geographic region recognized by social or legal convention.
geopolitical region
The geographic region bounded by Canada; the spatial region occupied by the US embassy in Ottawa.
sio:GermaniumAtom
germanium atom
CHEBI:30441
sio:Gesturing
gesturing is a form of non-verbal communication in which visible bodily actions communicate particular messages, either in place of speech or together and in parallel with spoken words. Gestures include movement of the hands, face, or other parts of the body.
gesturing
sio:GlassyCarbon
glassy carbon is an allotrope of carbon which is widely used as an electrode material in electrochemistry, as well as for high temperature crucibles and as a component of some prosthetic devices.
glassy carbon
sio:GlobalMaximalStationaryPoint
A global maximum stationary point is a data point that corresponds to a measurement value is larger than that of all other plotted datapoints.
global maximal stationary point
sio:GlobalMinimalStationaryPoint
A global minimum data point is a data point that corresponds to a measurement value is smaller than that of all other plotted datapoints.
global minimal stationary point
sio:GoldAtom
gold atom
CHEBI:29287
sio:GoodQuality
good quality
sio:GraduateStudentAdvisorRole
A graduate student advisor role is the role of an individual employed at an academic organization that is involved in advising graduate students.
graduate student advisor role
sio:GraphTitle
A graph title is a title that describes a graph.
graph title
Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm
sio:Graphite
graphite is an allotrope of carbon which is a conductor, and is the most stable form of solid carbon.
graphite
sio:Gratitude
appreciation
gratefulness
gratification
thankfullness
Gratitude, thankfulness, gratefulness, or appreciation is a feeling, emotion or attitude in acknowledgment of a benefit that one has received or will receive.
gratitude
sio:Grief
grief is an emotion in response to loss, whether physical or abstract including death, unemployment, ill health or the end of a relationship.
grief
sio:Guilt
guilty
Guilt is the emotion borne from feeling responsible for the commission of an offense and arises out of public humiliation.
guilt
sio:HafniumAtom
hafnium atom
CHEBI:33343
sio:Haplotype
A haplotype is one of a set of genomic sequence variants.
haplotype
sio:Happiness
happiness is an emotion characterized by positive or pleasant emotions ranging from contentment to intense joy.
happiness
sio:HardDiskDrive
A hard disk drive (HDD) is a non-volatile, random access device for digital data. It features rotating rigid platters on a motor-driven spindle within a protective enclosure. Data is magnetically read and written on the platter by read/write heads that float on a film of air above the platters.
hard disk drive
sio:HassiumAtom
hassium atom
CHEBI:33357
sio:Hate
Hate is a deep and emotional extreme dislike, directed against a certain object or class of objects.
hate
sio:Healthy
healthy is an organismal state of complete physical, mental and social well-being.
healthy
sio:Heatmap
A heatmap is a graphical representation of data where the individual values contained in a matrix are represented as colors.
heatmap
sio:Height
height is the one dimensional extent along the vertical projection of a 3D object from a base plane of reference.
height
sio:Helicity
helicity is the quality of being helical
helicity
sio:HeliumAtom
helium atom
CHEBI:30217
sio:Hemizygous
hemizygous is the quality of a biological organism in which, based on the ploidy of the organism, there is half the number of alleles than normal at a given locus.
hemizygous
sio:Hermaphrodite
hermaphrodite is a biological sex of an individual with both male and female sexual organs.
PATO:0001827
hermaphrodite
sio:HeterocyclicRing
A heterocyclic ring is a ring containing a hetero atom.
heterocyclic ring
sio:Heterogeneous
homogeneous is a quality that describes the varied composition of an object.
heterogeneous
sio:HeterogeneousSubstance
A heterogeneous substance is a chemical substance that is composed of more than one different kind of component.
heterogeneous substance
sio:Heterozygous
homozygous is the quality of a biological organism in which there are two different alleles at a given locus.
heterozygous
sio:HgvsNotation
The HGVS (human genome variation society) notation is a notation to specify a sequence variation in dna, rna, proteins, and other biomolecules.
hgvs notation
sio:Histogram
A histogram is a graphical representation of data which consists of tabular frequencies, shown as adjacent rectangles, over discrete intervals (bins) , with an area equal to the frequency of the observations in the interval.
histogram
sio:History
history is a sequence of past events.
history
sio:Hole
A hole is a site that is opening into or through something.
hole
sio:HolmiumAtom
holmium atom
CHEBI:49648
sio:HomePhoneNumber
a home phone number is the number to connect to an phone at a place of residence.
home phone number
sio:HomocyclicRing
A homocyclic ring is a ring where the atoms are of a single type.
homocyclic ring
sio:Homogeneous
homogeneous is a quality that describes the uniform composition of an object.
homogeneous
sio:HomogeneousSubstance
A homogeneous substance is a substance that is composed of a uniform type of entity.
homogeneous substance
sio:Homonym
A homonym is a word that sounds the same but has different meaning.
homonym
sio:Homozygous
homozygous is the quality of a biological organism in which there are two identical alleles at a given locus.
homozygous
sio:Hope
hope is an emotion of belief in a positive outcome related to events and circumstances in one's life.
hope
sio:HorizontalBarGraph
A horizontal bar graph is a bar graph in which the rectangular bars are horizontally oriented in space.
horizontal bar graph
Graph 3 in http://tinyurl.com/opwnvm
sio:HorizontalLine
A horizontal line is a line that is positionally oriented with the horizon.
horizontal line
sio:Host
A host is an organism that harbors a parasite, or a mutual or commensal symbiont, typically providing nourishment and shelter.
host
sio:HostRole
The role of an organism in providing resources to maintain the survival and/or reproduction of another organism.
host role
sio:Hostility
Hostility is the intense negative emotion of being in conflict or opposition to someone or something.
hostility
sio:Human
A human is a primates of the family Hominidae and are characterized by having a large brain relative to body size, with a well developed neocortex, prefrontal cortex and temporal lobes, making them capable of abstract reasoning, language, introspection, problem solving and culture through social learning.
human
sio:HumanPopulation
A human population refers to a collection of human beings.
human population
sio:Humiliation
Humiliation is the abasement of pride, which creates mortification or leads to a state of being humbled or reduced to lowliness or submission.
humiliation
sio:Hunger
hunger is the craving for food.
hunger
sio:Hurt
hurt is an unpleasant feeling, emotion or sensation.
hurt
sio:HydrogenAtom
hydrogen atom
CHEBI:49637
sio:HydrogenBond
A hydrogen bond is a weak submolecular interaction formed between a hydrogen atom and a electronegative atom.
hydrogen bond
sio:Hypernym
A hypernym is a term with a broader meaning.
hypernym
sio:Hyponym
A hyponym is a term with a narrower meaning.
hyponym
sio:Hypothesis
A hypothesis is a proposed explanation for a phenomenon.
hypothesis
sio:Hypothetical
hypothetical is the quality of an entity that is conjectured to exist.
hypothetical
sio:Hysteria
Hysteria is an unmanageable emotion.
hysteria
sio:IPNumber
IP address
an IP number is an number to connect to a device on the internet.
IP number
sio:Idea
An idea is a proposition about some object of conceptual thought.
idea
sio:Identifier
An identifier is a label that specifically refers to (identifies) an entity (instance/type).
identifier
sio:Image
depiction
An image is an affine projection of a visual entity to a two dimensional surface.
image
sio:InCHINotation
InCHI notation
sio:InactiveIngredient
Aninactive ingredient is a molecular entity that does not exhibit biological activity.
inactive ingredient
sio:InclusionCriterion
An inclusion criterion is a criterion that must be present to satisfy some objective.
inclusion criterion
sio:IncreaseInNumberOfObjectsProduced
An increase in the number of objects produced is the positive value of a difference in number of objects produced.
increase in number of objects produced
sio:Increased
A quality that has a value that is increased compared to normal or average.
PATO:0002300
increased
sio:IncreasedChemicalDestruction
increased chemical destruction is a process in which there is an increase in the amount of chemical destroyed relative to some reference process
increased chemical destruction
sio:IncreasedDurationOfProcessFromIncreasedRegulation
increased duration of process from increased regulation is a process in which the duration of the target process is increased as a result of increased regulation.
increased duration of process from increased regulation
sio:IncreasedFrequencyOfProcessFromIncreasedRegulation
The increase of regulation leads to a increased occurence of processes of the target type.
increased frequency of process from increased regulation
sio:IncreasedMolecularDegradationFromDecreasedRegulation
A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of decreased regulation.
increased molecular degradation from decreased regulation
sio:IncreasedMolecularDegradationFromIncreasedRegulation
A process that increases the frequency, rate or extent of process involved in the destruction of a molecule as a result of increased regulation.
increased molecular degradation from increased regulation
sio:IncreasedMolecularProductionFromDecreasedRegulation
A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of decreased regulation.
increased molecular production from decreased regulation
sio:IncreasedMolecularProductionFromIncreasedRegulation
A process that increases the frequency, rate or extent of process involved in the production of a molecule as a result of increased regulation.
increased molecular production from increased regulation
sio:IncreasedObjectConsumptionFromIncreasedRegulation
increased regulation leads to an increase in the consumption of an object of specified type.
increased object consumption from increased regulation
sio:IncreasedObjectProductionFromIncreasedRegulation
increased regulation leads to an increase in the number of target objects of a specified type.
increased object production from increased regulation
sio:IncreasedSpatialExtentOfProcessFromIncreasedRegulation
The increase of regulation leads to a increased spatial extent of the target process.
increased spatial extent of process from increased regulation
sio:IncreasingLine
An increasing line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is positive.
increasing line
sio:Indecision
indecisiveness
indecision is the emotion of being unable to choose between two or more possible courses of action.
indecision
sio:IndependentVariable
An independent variable is a variable that may take on different values independent of other elements in a system.
independent variable
sio:Indifference
indifference is an emotion characterized by lack of interest, concern, or sympathy.
indifference
sio:IndiumAtom
indium atom
CHEBI:30430
sio:InductiveArgument
An inductive argument is an argument that asserts that the truth of the conclusion is supported by the premises.
inductive argument
sio:InfiniteLine
An infinite line is a line that extends outwards in both directions of a single dimensional and is not bounded by terminal points.
infinite line
sio:InformationContentEntity
information content entity is an object that requires some background knowledge or procedure to correctly interpret.
core
ice+
information content entity
sio:InformationDecoding
information decoding
sio:InformationEncoding
information encoding
sio:InformationMaintenance
regulation of information
the regulation or maintenance of information
information maintenance
sio:InformationProcessing
information processing is a process that involves the generation or use of information.
information processing
sio:InformationTranslation
information translation
sio:InformationalEntityIdentifier
An informational entity identifier is an identifier for an informational entity.
informational entity identifier
sio:InformationalQuality
An informational quality is a quality that pertains to information.
informational quality
sio:Ingredient
an ingredient is a chemical substance that forms part of a mixture.
ingredient
sio:Inhibitor
A molecular inhibitor is a molecular regulator that realizes its disposition to conformationally change a target molecule and decrease its functionality.
inhibitor
sio:InhibitorRole
The role of a chemical entity that reduces the rate of reaction.
inhibitor role
sio:InorganicReaction
An inorganic reaction is a chemical reaction that involves the transformation of inorganic molecules.
inorganic reaction
sio:InsertionVariantRole
An insertion variant role is the role of an sequence that contains a sub-sequence that is considered to be an addition relative to the frame of reference.
insertion variant role
sio:Institute
institute is a society or organization having a object or common factor, and is normally applied to those with a scientific, educational, or social objective.
institute
sio:IntegerScale
An integer scale of measurement is one that only specifies integer values.
integer scale
sio:Intensity
intensity is a quality that represents the strength or degree of something.
intensity
sio:Intent
intent is a desire to realize a particular outcome.
intent
2
2
sio:Interacting
interacting is a process characterized by the interaction between two or more entities.
core
interacting
sio:Interest
interest is the emotion of wanting to know or learn about something or someone.
interest
sio:Intersection
An intersection is a list of only the values of an attribute for the entities in the defined set where all entities have that value.
intersection
sio:Intersex
intersex is a biological sex characterised by birth with genitalia and/or secondary sexual characteristics of indeterminate sex, or which combine features of both sexes.
intersex
sio:Interval
An interval is a set of real numbers that includes all numbers between any two numbers in the set.
an interval is a set of real numbers with the property that any number that lies between two numbers in the set is also included in the set.
interval
The set of all numbers x satisfying 0<=x<=1 is an interval which contains 0 and 1, as well as numbers between them.
sio:InterventionGroup
An intervention group is a group of individuals that are subject to an intervention.
intervention group
sio:InterventionStudy
An intervention study has the objective of improving the condition of an individual or a group of individuals, and demonstrates the magnitude of that capability by comparing it to a control group.
intervention study
sio:IntroductionSection
An introduction section is a document section that generally provides background, motivation and goals of the work.
introduction section
sio:Intron
An intron is a region of a gene that is removed from the final protein open reading frame.
intron
sio:InvalidArgument
An invalid argument is an argument where the truth of the conclusion is false because it is not a logical consequence of the premises.
invalid argument
sio:Investigation
study
investigation is the process of carrying out a plan or procedure so as to discover facts or information about the object of study.
investigation
sio:InvestigationalRole
An investigational role is a role held by participants involved in an investigation.
investigational role
sio:IodineAtom
iodine atom
CHEBI:24859
sio:Ion
An ion is an atom or molecule in which the total number of electrons is not equal to the total number of protons, giving it a net positive or negative electrical charge.
ion
1
1
sio:IonicCompound
An ionic compound is a mereological maximal sum of weakly connected paired positive and negative ions.
ionic compound
sio:IonicInteraction
An ionic interaction is a weak submolecular interaction between a charged submolecules.
ionic interaction
sio:Ionsdaleite
ionsdaleite is a hexagonal allotrope of the carbon allotrope diamond.
ionsdaleite
sio:IridiumAtom
iridium atom
CHEBI:49666
sio:IronAtom
iron atom
CHEBI:18248
sio:Irritability
irritable
irritability is the negative emotion of quick excitability to annoyance, impatience, or anger.
irritability
sio:Isomer
An isomer is a molecule that is compositionally identical to another molecule as a result of a different atomic connectivity.
isomer
sio:IsomerizationReaction
An isomerization reaction is a chemical reaction in which a molecule is converted into its isomer.
isomerization reaction
sio:Issue
An issue is a single instance of a periodically published journal, magazine, or newspaper.
Issue
issue
sio:Jealousy
jealousy is an emotion and typically refers to the negative thoughts and feelings of insecurity, fear, and anxiety over an anticipated loss of something that the person values, particularly in reference to a human connection.
jealousy
sio:Journal
A journal is a a peer-reviewed periodical in which scholarship relating to a particular academic discipline is published.
http://purl.org/ontology/bibo/Journal
Journal
journal
sio:Joy
joy is an emotion of intense happiness.
joy
sio:Justification
A justification is a proposition that defends, explains or excuses some argument.
justification
sio:Keyword
A keyword is a descriptor in which the association of the word with the entity facilitates information retrieval.
Keyword
keyword
sio:KryptonAtom
krypton atom
CHEBI:49696
sio:Label
a label is a term that is associated with some entity
label
sio:Language
Language is a language entity which is the result of encoding and decoding information through systematic creation and usage of systems of symbols, each pairing a specific sign with an intended meaning, established through social conventions
Language
language
sio:LanguageEntity
A language entity implements some language specification for the visual interpretation and is part of some document.
nlp+
language entity
sio:LanguageLabel
A language label is a label that denotes the language of a textual entity.
language label
sio:LanthanumAtom
lanthanum atom
CHEBI:33336
sio:LastName
A last name (surname) is a name added to a given name and is part of a personal name and is often the family name.
last name
sio:Latitude
Latitude is a geographic coordinate which refers to the angle from a point on the Earth's surface to the equatorial plane
latitude
sio:LawrenciumAtom
lawrencium atom
CHEBI:33397
sio:LeadAtom
lead atom
CHEBI:25016
sio:Learning
learning is the agentive process of acquiring knowledge.
learning
sio:Left-handedHelical
left-handed helical quality is the quality in which a clockwise screwing motion moves the helix towards the observed along the line of sight along the helix's axis.
left-handed helical
sio:LeftClosedInterval
a left closed interval is an interval in which there is a real number that is smaller than all its elements.
left closed interval
sio:LeftOpenInterval
a left open interval is an interval in which there is no element that is smaller than all other elements.
left open interval
sio:LeftValueAxis
A left value axis is a value axis that is spatially positioned to the left of the plot area.
left value axis
The value axis that ranges from 3.0 to 7.4 and corresponds to billions of dollars in Graph 1 of http://tinyurl.com/opwnvm
sio:LegalDocument
A legal document is a formally executed written document that can be formally attributed to its author, records and formally expresses a legally enforceable act, process, or contractual duty, obligation, or right, and therefore evidences that act, process, or agreement.
legal document
sio:LegalName
A legal name is a name given at birth, or which appears on their birth certificate, marriage certificate, or change of name certificate.
legal name
sio:Legend
A legend is a part of a figure that associates textual descriptions with symbols pertaining to plotted entities.
legend
The colored line segments and the adjacent textual descriptions in
Graph 1 of http://tinyurl.com/opwnvm
sio:Legislation
A legal document proposing or enacting a law or a group of laws.
legislation
sio:Length
length is the longer dimensional extent along a 2D projection of the object.
Length
length
sio:LengthOfPerimeter
A perimeter is a length of the outline that surrounds a two-dimensional shape.
length of perimeter
sio:Letter
A letter is a document that contains a personal communication from one part to another.
letter
sio:LifeStatus
life status is the quality of whether something is alive or dead.
life status
sio:Ligand
A ligand is a molecule that is part of a complex by weakly interacting with another molecule.
ligand
sio:Likelihood
Likelihood is the hypothetical probability that an event that has already occurred would yield a specific outcome.
likelihood
sio:Line
A line is curve that extends in a single dimension (e.g. straight line; exhibits no curvature), and is composed of at least two fully connected points.
line
sio:Line-barGraph
A line-bar graph statistical graph that contains both lines and bars.
line-bar graph
Graph 8 in http://tinyurl.com/opwnvm
sio:LineGraph
line chart
A line graph is a statistical graph in which lines contains the evaluation of functions or individual points connected by line segments.
line graph
Graph 1 in http://tinyurl.com/opwnvm
2
sio:LineSegment
A line segment is a line and a part of a curve that is (inclusively) bounded by two terminal points.
line segment
sio:LinearPosition
A linear position is the position of some object against a linear positioning system.
linear position
sio:LinearValueAxis
A linear value axis is a value axis that corresponds to a scaling factor of 1 of the value range.
linear value axis
sio:Lipid
A lipid is a water-insoluable organic molecule.
lipid
sio:LipidResidue
A lipid residue is a part of an organic molecule that was derived from a lipid molecule.
lipid residue
sio:LiquidSolution
A liquid solution is a heterogeneous substance in a liquid state.
liquid solution
sio:LiquidSolutionComponent
A liquid solution component is a part of a liquid solution.
liquid solution component
sio:List
A list is any enumeration of a set of items.
list
sio:ListItem
a list item is an item in a list.
list item
sio:LiteratureCuration
literature curation is the process of an agent selecting and extracting terms and phrases from a document.
literature curation
sio:LithiumAtom
lithium atom
CHEBI:30145
sio:Loathing
loathing is an intense dislike or disgust.
loathing
sio:LocalMaximumStationaryPoint
A local maximum stationary point is a point that has a higher value in some axis than adjacent points.
local maximum stationary point
sio:LocalMinimumStationaryPoint
A local minimum stationary point is a point that has a lower value in some axis than adjacent points.
local minimum stationary point
sio:Locomotion
The self-propelled movement of an object.
GO:0040011
locomotion
sio:LogLikelihood
Log likelihood is the natural logarithm of the likelihood function
log likelihood
sio:LogarithmicValueAxis
A logarithmic value axis is a scaled value axis that corresponds to a scaling factor of the logarithm of the value range.
logarithmic value axis
sio:LogicalOperator
A logical operator is a unary or binary relation to construct logical expressions.
logical operator
sio:Loneliness
Loneliness is an unpleasant emotion in which a person feels a strong sense of emptiness, yearning distress and solitude resulting from inadequate quantity or quality of social relationships.
loneliness
sio:Longitude
Longitude is a geographic position that refers to the angle east or west of a reference meridian between the two geographical poles to another meridian that passes through an arbitrary point.
longitude
sio:Love
love is an emotion of a strong affection and personal attachment.
love
sio:LowBarrierHydrogenBond
A low barrier hydrogen bond is a shorter, stronger hydrogen bond that is formed between both heteroatoms.
low barrier hydrogen bond
sio:Lust
lust is the strong desire for sex.
lust
sio:LutetiumAtom
lutetium atom
CHEBI:33382
sio:MRNASpliceVariant
An mRNA splice variant is an mRNA molecule that varies from another mRNA molecule of the same gene origin but having a different final sequence due to differences in its assembly from splice sites.
mRNA splice variant
sio:Magazine
A magazine is a periodical that typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports.
http://purl.org/ontology/bibo/Magazine
magazine
sio:MagnesiumAtom
magnesium atom
CHEBI:25107
sio:MaintenanceOfDurationOfProcess
maintenance of duration of process is a process that regulates a target process to maintain its duration within an expected interval.
maintenance of duration of process
sio:MaintenanceOfFrequencyOfProcess
maintenance of frequency of process is a process that regulates the number of occurences of a target process type to a specified number or interval.
maintenance of frequency of process
sio:MaintenanceOfLevelOfObjectConsumption
regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is maintained at a steady level.
maintenance of level of object consumption
sio:MaintenanceOfQuantityOfObjectProduction
maintenance of quantity of object production is a regulation of object production in which the number of objects produced is held more or less constant.
maintenance of quantity of object production
sio:MaintenanceOfSpatialExtentOfProcess
maintenance of spatial extent of process is a regulation of a process' spatial extent within some specified parameter.
maintenance of spatial extent of process
sio:MajorTickMark
A major tick mark is a tick mark that indicates the position of a specific numeric value and is adjacent to its value label on the value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value indicated by an adjacent category label on the categorical axis.
major tick mark
sio:MajorVersionNumber
A major version number is a version of a software that exhibits a significant change in functionalilty from a prior version.
major version number
sio:Male
male is a biological sex of an individual with male sexual organs.
PATO:0000384
male
sio:ManganeseAtom
manganese atom
CHEBI:18291
sio:Manual
A manual is a document that instructs on the usage of a device.
manual
sio:Manuscript
A manuscript is a document prior to publication.
manuscript
sio:Map
A map is a a visual representation of an area that depicts the relationship between elements of that space.
map
sio:Mass
mass is the quality of the amount of substance.
mass
sio:MassSpectrometer
A mass spectrometer is a device that identifies ions based on their mass to charge ratio using an electromagnetic field.
http://purl.obolibrary.org/obo/OBI_0000049
mass spectrometer
sio:MassSpectrometryExperiment
A mass spectrometry experiment is an experiment that involves the use of a mass spectrometer.
mass spectrometry experiment
sio:MaterialBoundary
A material boundary is the boundary of a material entity which exists as a lower dimensional entity at exactly the location where its parts no longer extend into space. Every material entity has a boundary, and a boundary is the boundary of exactly 1 material entity.
material boundary
the external surface of the window; the surface of the p52 protein
sio:MaterialEntity
A material entity is a physical entity that is spatially extended, exists as a whole at any point in time and has mass.
core
Material Entity
material entity
A material entity is a physical entity that is spatially extended, exists as a whole at any point in time and has mass.
https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-release.owl
sio:MaterialsAndMethodsSection
The materials and methods section is a document section containing a description of the materials and methods used in the study.
materials and methods section
sio:MaterialsSection
The materials section is a document section containing a description of the materials used in the study.
materials section
sio:MaternallyTransmitted
maternally transmitted is the quality of a biological organism in which the (genetic) material is transmitted from the maternal line.
maternally transmitted
sio:MathematicalEntity
A mathematical entity is an information content entity that are components of a mathematical system or can be defined in mathematical terms.
math+
mathematical entity
sio:Matrix
rank 2 tensor
a matrix is a rank 2 tensor. It is represented as a rectangular array or table of numbers, symbols, or expressions arranged in rows and columns.
matrix
sio:Matrix
sio:MatrixChart
A matrix chart summarizes a multidimensional data set in a grid.
matrix chart
sio:MatureMRNA
A mature RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns.
mature mRNA
sio:MaximalValue
max
A maximal value is largest value of an attribute for the entities in the defined set.
maximal value
sio:Mean
arithmeritic mean
average
A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection.
mean
sio:MeasurementScale
A measurement scale is a functional specification that specifies an allowed range of categories or values.
measurement scale
sio:MeasurementValue
A measurement value is a quantitative description that reflects the magnitude of some attribute.
measurement value
sio:Measuring
measurement
measuring is the process of determining the size, amount, or degree of (something) by using an instrument or device marked in standard units
measuring
sio:Media
media are audo/visual/audiovisual modes of communicating information for mass consumption.
media
sio:Median
A median is the numerical value separating the higher half of a sample, a population, or a probability distribution, from the lower half.
median
sio:MedicalData
medical data is data of interest to medicine.
medical data
sio:MedicalDiagnosis
A medical diagnosis (often simply termed diagnosis) refers to the process of attempting to determine or identify a possible disease or disorder.
medical diagnosis
sio:MedicalHealthRecord
A medical health record is a record of a single patient's medical history.
medical health record
sio:MedicalHistory
A medical history is a record of the events of a recipient of medical care.
medical history
sio:MedicalIntervention
a medical intervention is a medical procedure to treat (to cure or alleviate) a health condition.
medical intervention
sio:MedicalPractitioner
A medical practioner is an individual that provides medical care.
medical practitioner
sio:MedicalProcedure
A medical procedure is a procedure to identify, examine, alleviate or eliminate an undesirable biological disease or disorder.
medical procedure
sio:MedicalReport
A medical report is a report prepared by a health care practioner about test outcomes or health status of an individual.
medical report
sio:MedicalRole
A medical role is the role of an individual that is a participant in the delivery of medical care.
medical role
sio:MedicalScreening
A medical screening is a medical test or series used to detect or predict the presence of disease in individuals at risk for disease within a defined group, such as a population, family, or workforce
medical screening
sio:MeitneriumAtom
meitnerium atom
CHEBI:33361
sio:MemberCount
A count of the instances of a class or members in a collection.
member count
sio:MembraneTransport
membrane transport is the movement of molecules across a membrane.
membrane transport
sio:MendeleviumAtom
mendelevium atom
CHEBI:33395
sio:MercuryAtom
mercury atom
CHEBI:25195
sio:MereologicalChart
A mereological chart is a chart that illustrates the parts in the context of the whole.
mereological chart
sio:MereologicalQuality
a mereological quality is a quality of an entity vis-a-vis containment or parthood
mereological quality
sio:Messenger
A mesenger is a molecule involved in either signal detection or signal propagation from receptors on the cell surface to target molecules inside the cell, in the cytoplasm or nucleus.
messenger
sio:MessengerRNA
A messenger RNA is a ribonucleic acid that contains an untranslated region (UTR) and protein coding sequence and lacks introns.
messenger RNA
sio:MetabolicPathway
A metabolic pathway is a series of biochemical reactions that begins with one or more substrates and ends with one or more products.
metabolic pathway
sio:Metabolism
Metabolism is the set of chemical processes that occur within a living organism in order to maintain life.
metabolism
sio:Metadata
metadata is data that provides information about data.
metadata
sio:MethodsSection
The methods section is a document section containing a description of the methods used in the study.
methods section
sio:MicroRNAmiRNA
A microRNA (abbreviated miRNA) is a small non-coding RNA molecule (containing about 22 nucleotides) found in plants, animals and some viruses, that functions in RNA silencing and post-transcriptional regulation of gene expression.
miRNA
microRNA (miRNA)
sio:MicroarrayDevice
microarray platform
A microarray device is a device that identifies the binding of a target substance to a physically immobile substrate placed in an array or lattice.
http://purl.obolibrary.org/obo/OBI_0000052
microarray device
sio:MicroarrayExperiment
A microarray experiment is an experiment that involves a microarray device to measure the expression of one or more genes.
microarray experiment
sio:MicroarrayProbeSetIdentifier
A microarray probe set identifier is an identifier for a set of probe pairs selected to represent expressed sequences on an array.
microarray probe set identifier
sio:MiddleInitial
a middle initial is an abbreviated middle name.
middle initial
sio:MiddleName
a middle name is a name assigned to an individual that is not the first or last name.
middle name
sio:Mild
mild is a qualitative intensity value that is more intense than weak, but less intense than moderate.
mild
sio:Millennium
A millenium is a period of 1000 years
millennium
sio:MinimalValue
min
A minimal value is smallest value of an attribute for the entities in the defined set.
minimal value
sio:MinorTickMark
A minor tick mark is a tick mark that indicates the position of a specific numeric value but has no adjacent value label, or is one of a pair of tick marks that delineates the boundary of a categorical value but has no adjacent category label on the categorical axis.
minor tick mark
sio:MinorVersionNumber
A minor version number is a version of a software that exhibits minor features or significant fix from a prior version.
minor version number
sio:Minute
A minute is a period of 60 seconds.
minute
sio:Misery
misery is a feeling of great unhappiness, suffering and/or pain.
misery
sio:Mode
A mode is the value that appears most often in a set of data.
mode
sio:Model
A model is a representation of some thing.
model
sio:Moderate
moderate is a qualitative intensity value that is more intense than mild, but less intense than strong.
moderate
sio:ModeratelyQuantifier
moderately quantifier
sio:Modifying
modification
modifying is the process by which an entity gains or loses parts, qualities, roles, dispositions, functions, etc, but maintains their identity through these changes.
modifying
sio:MolecularComplex
A molecular complex is a chemical complex composed of at least one weakly interacting molecule.
molecular complex
sio:MolecularComplexDissociation
molecular complex disassociation is the process of dissambly of a molecular complex into its constitutent parts.
molecular complex dissociation
sio:MolecularComplexFormation
molecular complex formation is the process of forming a molecular complex from its constituent parts.
molecular complex formation
sio:MolecularEntityRole
A molecular entity role is a chemical entity role held by a molecule.
molecular entity role
sio:MolecularIdentifier
A molecular identifier is an identifier for a molecular entity.
molecular identifier
sio:MolecularModification
Molecular modification is chemical alteration of a known and previously characterized lead compound for the purpose of enhancing its usefulness as a drug. This could mean enhancing its specificity for a particular body target site, increasing its potency, improving its rate and extent of absorption, modifying to advantage its time course in the body, reducing its toxicity, changing its physical or chemical properties (like solubility) to provide desired features.
molecular modification
sio:MolecularOrbital
A molecular orbital (or MO) is a mathematical function describing the wave-like behavior of an electron in a molecule.
molecular orbital
sio:MolecularPocket
A molecular pocket is a site on a molecule that appears as a depression into the structure.
molecular pocket
sio:MolecularRegulator
A molecular regulator is a molecule that regulates the function of another chemical entity.
molecular regulator
sio:MolecularSite
A moleclar site is a spatial region bounded (in part or in whole) by a molecule and may be occupied by other material entities (e.g. drugs).
molecular site
sio:MolecularStructure
molecular geometry
molecular structure is the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together.
molecular structure
sio:MolecularStructureDescriptor
molecular structure descriptor is data that describes some aspect of the molecular structure (composition) and is about some chemical entity.
molecular structure descriptor
CHEMINF:000085
sio:MolecularStructureFile
A molecular structure file is a file that contains a description of molecular structure.
molecular structure file
sio:MolecularTracerRole
A molecular tracer role is a reactant role of a molecular entity that serves as a marker for the presence, abundance, or location of a molecular target that it associates with.
molecular tracer role
sio:Molecule
A molecule is a single chemical entity composed of fully covalently bonded atoms.
molecule
CHEBI:23367
sio:MolybdemumAtom
molybdemum atom
CHEBI:28685
sio:Monomer
A monomer is a submolecule that is proper part of some polymer, and is a building block for such polymer.
monomer
sio:Monosaccharide
A monosaccharide is an organic molecule that consists of a single polyhydroxy aldehyde or ketone group.
monosaccharide
sio:Month
A month is a period of time that divides the year.
month
sio:Morpheme
A morpheme is the smallest semantically meaningful unit in a language.
morpheme
sio:MostOfTheTime
most of the time
most refers to in the majority of occasions
most of the time
sio:MostlyQuantifier
mostly quantifier
sio:Mouse
A mouse is a small mammal belonging to the order of rodents, characteristically having a pointed snout, small rounded ears, and a long naked or almost hairless tail.
mouse
sio:Movement
movement is the process in which an object is spatially displaced.
core
movement
sio:MovementEquation
A movement equation describes the displacement of an object in space over time.
movement equation
sio:Movie
film
moving pictures
A movie is a series of images that are displayed in rapid succession to give the impression of movement.
movie
2
sio:MulticellularOrganism
A multi-cellular organism is an organism that consists of more than one cell.
multicellular organism
sio:MultipleSequenceAlignment
A multiple sequence alignment is a sequence alignment involving more than two sequences.
multiple sequence alignment
sio:MutualDisposition
A mutual disposition is a disposition that simulataneously invokes another disposition when realized.
mutual disposition
sio:Name
A name is a label used to identify an entity.
name
sio:Namespace
A namespace is an informational entity that defines a logical container for a set of symbols or identifiers.
namespace
sio:NamespaceLabel
A namespace label is a short name for a namespace.
namespace label
sio:Negationnot
NOT is a logical operator in that has the value true if its operand is false.
negation (not)
sio:Negative
negative is an assertional qualifier that expresses the falsity or lack of truth of a basic assertion.
negative
sio:NegativeCharge
A negative charge is a charge where the value is negative.
negative charge
sio:NegativeEmotion
negative emotion is an emotion that does not feel good.
negative emotion
sio:NegativeNucleicAcidStrand
reverse strand
The negative nucleic acid strand is the strand that is that is complimentary to the forward strand and appears from 3' to 5'.
negative nucleic acid strand
sio:NeitherGoodNorPoorQuality
neither good nor poor quality
sio:NeitherSatisfiedOrDissatisfiedQualifier
neither satisfied or dissatisfied qualifier
sio:NeodymiumAtom
neodymium atom
CHEBI:33372
sio:NeonAtom
neon atom
CHEBI:33310
sio:NeptuniumAtom
neptunium atom
CHEBI:33387
sio:NetworkDiagram
A network diagram consists of a set of vertices connected by edges.
network diagram
sio:Never
none of the time
never refers to in none of the occasions.
never
sio:Newspaper
A newspaper is a periodical publication containing news regarding current events, informative articles, diverse features, editorials, and advertising.
http://purl.org/ontology/bibo/Newspaper
newspaper
sio:NickelAtom
nickel atom
CHEBI:28112
sio:NiobiumAtom
niobium atom
CHEBI:33344
sio:NitrogenAtom
nitrogen atom
CHEBI:25555
sio:NmrDevice
nuclear magnetic resonance device
A nuclear magnetic resonance (NMR) device is a device that applies a magnetic field to perturb nuclei with an odd number of protons and/or of neutrons in order to hav them absort and re-emit electromagnetic radiation.
http://purl.obolibrary.org/obo/OBI_0000566
nmr device
sio:NobeliumAtom
nobelium atom
CHEBI:33396
sio:Node
vertex
a node or vertex is a point in a graph.
node
sio:NomimalScale
A nominal scale of measurement only specifies a limited set of categories.
nomimal scale
sio:Non-cellularOrganism
A non-cellular organism is an organism that does not contain a cell.
non-cellular organism
sio:Non-polar
non-polar is the quality of not having a dipole.
non-polar
sio:Non-polarAdditionReaction
A non-polar addition reaction is an addition reaction involving non-polar residues.
non-polar addition reaction
sio:Non-proteinCodingRNAncRNA
A non-protein coding RNA (ncRNA) is a RNA molecular that cannot be used as a template for generating a protein product.
non-protein coding RNA (ncRNA)
sio:Non-proteinCodingRNAncRNAGene
ncRNA gene
A non-protein coding RNA (ncRNA) gene is a gene that encodes for a RNA transcript that is not further translated into a protein product.
http://purl.obolibrary.org/obo/SO_0001263
non-protein coding RNA (ncRNA) gene
sio:NonToxic
non toxic is the quality of a substance having no damaging effect to a system.
non toxic
sio:NoneQuantifier
none quantifier
sio:NonpolarSolvent
A non-polar solvent is a solvent that exhibits a non-polar quality.
nonpolar solvent
sio:Normal
A quality that has a value that is normal or average.
PATO:0000461
normal
sio:Normality
normality is the quality in which the value may differ from normal or average
normality
sio:NotStarted
not started is the status of a process that is predicted to exist but has not yet begun.
not started
sio:Notation
a notation is a series or system of written symbols used to represent numbers, amounts, or elements.
notation
sio:Note
A note is a brief document.
note
sio:Novel
A novel is a fictitious prose narrative of book length, typically representing character and action with some degree of realism.
novel
2
sio:NucleicAcid
A nucleic acid is an organic polymer composed of a sequence of nucleotide residues.
nucleic acid
sio:NucleicAcidPart
A nucleic acid part is a component of a nucleic acid.
nucleic acid part
sio:NucleicAcidSequence
A nucleic acid sequence is a symbolic representation of the sequence of nucleic acid residues in a nucleic acid.
nucleic acid sequence
sio:NucleicAcidStrand
A nucleic acid strand is a single-stranded nucleic acid that is part of a double stranded nucleic acid complex.
nucleic acid strand
sio:NucleophilicAdditionReaction
A nucleophilic addition reaction is an addition reaction where a pi bond is removed by the creation of two new covalent bonds by the addition from a nucleophile.
nucleophilic addition reaction
sio:NucleotideResidue
A nucleotide residue is a part of a molecule that derives from a nucleotide.
nucleotide residue
sio:Nullizygous
nullizygous is the quality of a biological organism in which there are no allelles at a given locus.
nullizygous
sio:Number
rank 0 tensor
A number is a tensor of rank 0.
number
sio:NumberOfObjectsConsumed
number of objects consumed is a count of objects that were consumed in some process.
number of objects consumed
sio:NumberOfObjectsProduced
number of objects produced is a count of objects that were produced in some process.
number of objects produced
sio:NumericLabel
A numeric label is a number used as a label.
numeric label
sio:NumericScale
A numeric scale of measurement is one that only specifies numeric values.
numeric scale
sio:Nurse
A nurse is an individual that is involved in the protection, promotion, and optimization of health and abilities, prevention of illness and injury, alleviation of suffering through the diagnosis and treatment of human response, and advocacy in the care of individuals, families, communities, and populations.
nurse
sio:NurseRole
A nurse role is the role of an individual that is involved in the protection, promotion, and optimization of health and abilities, prevention of illness and injury, alleviation of suffering through the diagnosis and treatment of human response, and advocacy in the care of individuals, families, communities, and populations.
nurse role
sio:OBOOntology
An OBO ontology is an ontology document as specified by the Open Biological Ontology community.
OBO ontology
sio:OWLOntology
An OWL ontology is an ontology as specified by the W3C OWL specification.
OWL ontology
sio:Object
An object is an entity that is wholly identifiable at any instant of time during which it exists.
core
object
sio:ObjectModel
An object model is a representation of an object.
object model
sio:ObjectQuality
An object quality is quality of an object.
object quality
sio:ObjectRelationalQuality
object relational quality refers to a quality in relation to one or more objects
object relational quality
sio:Objective
An objective is a proposition that indicates a planned or anticipated outcome.
objective
sio:ObservationalStudy
observational study draws inferences about the possible effect of a treatment on subjects, where the assignment of subjects into a treated group versus a control group is outside the control of the investigator
observational study
sio:Observing
observation
observing is a process of passive interaction in which one entity makes note of attributes of one or more entities.
observing
sio:OccupationalRole
An occupational role is a social role that pertains to an organizational structure.
occupational role
sio:Oligopeptide
an oligopeptide is an organic polymer composed of fewer than 10 or 15 amino acids.
oligopeptide
sio:Ongoing
ongoing is the status of a process that is not yet complete.
ongoing
sio:Ontology
an ontology is a formal specification of entities, their attributes and relationships.
ontology
sio:OntologyDocument
An ontology document is a document that contains an ontology.
ontology document
sio:OpenInterval
an open interval is an interval that does not include its endpoints.
open interval
(0,1) is an open interval that is greater than 0 and less than 1.
1
1
sio:OpenReadingFrame
An open reading frame (ORF) is a part of a gene that encodes a protein but does not contain a stop codon.
open reading frame
sio:Operon
An operon is a collection of contiguous genes transcribed as a single (polycistronic) mRNA.
SO:0000178
operon
sio:Opinion
An opinion is a belief that is the result of emotion or interpretation of facts.
opinion
sio:OpticalIsomer
An optical isomer is a stereoisomer that rotates the plane of polarization of a beam of plane polarized light.
optical isomer
sio:OrderedList
an ordered list is a list in which items are sequentially ordered.
ordered list
sio:OrderedListItem
an ordered list item is an item in an ordered list.
ordered list item
sio:OrdinalPosition
offset
A ordinal position is a number that designates the position of an entity from the first entity in an ordered sequence of entities.
Ordinal Position
ordinal position
An ordinal position is a number that designates the position of an entity from the first entity in an ordered sequence of entities.
sio:OrdinaryDifferentialEquation
An ordinary differential equation (ODE) is a differential equation in which the unknown function (also known as the dependent variable) is a function of a single independent variable.
ordinary differential equation
sio:Organ
An organ is a collection of tissues joined in structural unit to serve a common function.
organ
sio:OrganicMolecule
An organic molecule is a molecule composed of organic atoms (at least carbon, hydrogen, and optionally oxygen, phosphorus, nitrogen, sulfur)
organic molecule
sio:OrganicPolymer
An organic polymer is an organic molecule composed of connected set of monomeric units.
organic polymer
sio:OrganicReaction
An organic reaction is a chemical reaction involving at least one organic molecule.
organic reaction
sio:OrganicSubmolecule
An organic submolecule is connected region of a molecule.
organic submolecule
sio:Organism
A biological organisn is a biological entity that consists of one or more cells and is capable of genomic replication (independently or not).
organism
sio:Organization
An organization is a collective with a complex articulation of tasks, roles and responsibilities.
organization
sio:Orientation
orientation is an angle between the bearer and an axis, or the angle between the bearer and another object.
orientation
sio:OsmiumAtom
osmium atom
CHEBI:30687
sio:Osmosis
osmosis is the movement of water molecules through a selectively-permeable membrane down a water potential gradient.
osmosis
sio:Ovopub
An ovopub is an information content entity that contains and links to one or more resources and/or statements, including those describing its provenance, and is itself a dereferenceable resource.
ovopub+
ovopub
sio:OxygenAtom
oxygen atom
CHEBI:25805
sio:PDBChainIdentifier
A PDB chain identifier is a alphabetical label to identify a molecule in a structure provided by the Protein DataBank .
PDB chain identifier
sio:PDBFile
A PDB file is a molecular structure file specified by the Protein DataBank (PDB).
PDB file
sio:PDBRecordIdentifier
A PDB record identifier is an identifier for a PDB generated record.
PDB record identifier
sio:PH
pH is a measure of the activity of the (solvated) hydrogen ion.
pH is defined as the decimal logarithm of the reciprocal of the hydrogen ion activity, aH+, in a solution.
pH
sio:PageNumber
A page number is the count of a page in a sequence of pages.
page number
sio:PageRange
A page range denotes the start and end page in some document.
page range
sio:PageTotal
A page total is a textual entity that is about the number of pages in some informational entity.
page total
sio:Pain
Pain is an unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage.
pain
sio:PairwiseSequenceAlignment
A pairwise sequence alignment is the alignment of exactly 2 sequences.
pairwise sequence alignment
sio:PalladiumAtom
palladium atom
CHEBI:33363
sio:Panic
Panic is a sudden emotion of fear which is so strong as to dominate or prevent reason and logical thinking, replacing it with overwhelming feelings of anxiety and frantic agitation consistent with an animalistic fight-or-flight reaction.
panic
sio:Paragraph
A paragraph is a self-contained unit of written discourse consisting of one or more sentences.
paragraph
sio:Parameter
A parameter is variable whose value changes the characteristics of a system or a function.
parameter
sio:ParameterizedDataTransformation
A parameterized data transformation is a data transformation whose behaviour may be modified by one or more parameters.
parameterized data transformation
sio:ParentalTransmission
parental transmition is the quality of a biological organism in which the (genetic) material is transmitted from a parental unit.
parental transmission
sio:PartialCharge
The quality of having a charge that is not a full multiple of 1 unit charge.
partial charge
sio:PartialDifferentialEquation
A partial differential equation (PDE) is a differential equation in which the unknown function is a function of multiple independent variables and the equation involves its partial derivatives.
partial differential equation
sio:PartialNegativeCharge
A partial positive charge is a partial charge where the value of the charge is positive.
partial negative charge
sio:PartialPositiveCharge
A partial negative charge is a negative charge where the value of the charge is negative.
partial positive charge
sio:Passion
passion is the intense desire for something.
passion
sio:PassiveMovement
passive movement is the process in which an object is spatially displaced without an expenditure of energy contained in molecular bonds.
passive movement
sio:PassiveTransport
passive transport is the movement of a substance across a membrane and does not require chemical energy.
passive transport
sio:Patent
A patent is an information entity granted by a patent issuing authority which confers upon the patenter the sole right to make, use and sell an invention for a set period of time.
patent
sio:PaternallyTransmitted
paternally transmitted is the quality of a biological organism in which the (genetic) material is transmitted from the paternal line.
paternally transmitted
sio:Pathogen
A pathogen or infectious agent is a microorganism that causes disease in its host.
pathogen
sio:Pathway
biological pathway
A pathway is an effective specification that outlines a set of actions that forms a way to achieve an objective.
pathway
sio:Patient
A patient is an individual that is the recepient of medical care.
patient
sio:PatientRole
A patient role is the role of an individual that is the recepient of medical care.
patient role
sio:Pattern
A pattern is a generalized representation of some repeatable concrete or informational item.
pattern
sio:Peer-reviewed
peer-reviewed is the quality of a textual entity that has been examined and commented by a peer expert reviewer.
peer-reviewed
sio:PeerReviewedArticle
A peer reviewed article is an article that has undergone peer-review and deemed acceptable for publication.
peer reviewed article
sio:Peptide
a peptide is an organic polymer composed of between two and fifty amino acids.
peptide
sio:Percentage
A percentage is a number that is a ratio expressed as a fraction of 100. It is denoted using the percent sign "%".
percentage
sio:Percentile
A percentile (or a centile) is a quantile that divides the given probability distribution, or sample, into 100 equal-sized intervals.
percentile
sio:Perception
perception is the organization, identification, and interpretation of sensory information in order to fabricate a mental representation through the process of transduction, which sensors in the body transform signals from the environment into encoded neural signals.
perception
sio:Periodical
A periodical is a publication that appears on a regular schedule.
http://purl.org/ontology/bibo/Periodical
periodical
sio:Person
A person is an object that has certain capacities or attributes constituting personhood.
person
sio:PersonalName
full name
A personal name is a name to identify an individual person and usually comprises of a first name and a last name.
personal name
sio:PharmaceuticalDrug
medicine
A pharmaceutical preparation is a chemical substance that is approved for use in the medical diagnosis, cure, treatment, or prevention of disease.
pharmaceutical drug
sio:PharmaceuticalIngredient
A pharmaceutical ingredient is a part of a pharmaceutical preparation.
pharmaceutical ingredient
sio:PharmacodynamicPathway
a pharmacodynamic pathay is a regulatory pathway in which a drug molecule regulates the activity of one or more components organized in a pathway.
pharmacodynamic pathway
sio:PharmacokineticPathway
a pharmacokinetic pathway is a metabolic pathway which describes the metabolism of a drug molecule.
pharmacokinetic pathway
sio:PhdThesis
A PhD thesis is a thesis prepared as a requirement for a doctoral degree.
phd thesis
sio:Phenotype
A phenotype is an observable characteristic of an individual.
phenotype
sio:PhosphorusAtom
phosphorus atom
CHEBI:28659
sio:Photograph
photo
A photograph is an image created by light falling on a light-sensitive surface.
photograph
2
sio:Phrase
A phrase is a group of words functioning as a single unit in the syntax of a sentence.
phrase
sio:PhraseNetDiagram
A phrase net diagram illustrates the relationship between different words used in a text.
phrase net diagram
sio:PhysicalEntityIdentifier
A physical entity identifier is an identifier for a physical entity.
physical entity identifier
sio:PieChart
A pie chart is a circular chart divided into sectors each of whose length is proportional to the quantity it represents.
pie chart
sio:Pity
Pity is the emotion of sadness or sorrow for another.
pity
sio:Placebo
A placebo is a medically ineffectual treatment for a medical condition intended to deceive the recipient.
placebo
sio:Plan
A plan is a set of intended actions, through which one expects to achieve a goal.
plan
sio:Planned
planned is a process status for a process that has not yet started, but is referred to in a plan.
planned
sio:Planning
planning is the agentive process of developing a plan that specifies a set of actions in order to meet a set of goals or objectives.
planning
sio:PlateauLine
An plateau line is a line segment in which the startpoint and endpoint are ordered along one dimension and the difference of values in a second dimension is zero.
plateau line
sio:PlatinumAtom
platinum atom
CHEBI:33364
sio:Pleasure
pleasure is an emotion of happy satisfaction and enjoyment.
pleasure
sio:Ploidy
ploidy is the cellular quality relating to the amount of DNA contained in a cell.
ploidy
sio:Plot
A plot is a part of a figure that corresponds to the spatial region between the set of axes.
plot
The square portion of the chart bounded by lines that overlap with
the two axes in Graph 1 of http://tinyurl.com/opwnvm
sio:PlutoniumAtom
plutonium atom
CHEBI:33388
sio:Point
A point is a geometric entity that is located in a zero-dimensional spatial region and whose position is defined by its coordinates in some coordinate system.
point
sio:Poison
A poison is a drug that is harzardous or toxic to an organism when ingested at a certain quantity.
poison
sio:PoisonRole
A poison role is the role of a substance that causes some negative disturbance in an organism.
poison role
sio:Polar
polar is the quality of having a dipole.
polar
sio:PolarAdditionReaction
A polar addition reaction is an addition reaction involving polar residues.
polar addition reaction
sio:PolarCoordinate
A polar coordinate is a position characterized by a distance from a fixed point and an angle from a fixed direction.
polar coordinate
sio:PolarCoordinateSystem
A polar coordinate system is a two-dimensional coordinate system in which each point on a plane is determined by a distance from a fixed point and an angle from a fixed direction.
polar coordinate system
sio:PolarQuality
The quality of being polar or not polar.
polar quality
sio:PolarSolvent
A polar solvent is a solvent that exhibits a polar quality.
polar solvent
sio:PoloniumAtom
polonium atom
CHEBI:33313
sio:Polygon
A polygon is a planar entity that is bounded by a closed path or circuit, composed of a finite connected sequence3 of straight line segments.
polygon
2
sio:PolygonEdge
A polygon edge is a line segment joining two polygon vertices.
polygon edge
2
1
sio:PolygonVertex
A polygon vertex is a terminal point at which two polygon edges meet and are part of a polygon.
polygon vertex
sio:PolygonalFace
A polygonal face is a polygon bounded by a circuit of polygon edges, and includes the flat (plane) region inside the boundary.
polygonal face
sio:PolyhedralSkeleton
A polyhedral skeleton is a collection of polygon edges.
polyhedral skeleton
sio:PolyhedralSurface
A polyhedral surface is composed of polygonal faces.
polyhedral surface
2
sio:Polyline
polygonal chain, polygonal curve, polygonal path, piecewise linear curve
A polyline is a connected sequence of line segments.
polyline
sio:Polymer
A polymer is a molecule composed of a connected set of monomeric residues.
Polymer
polymer
2
sio:Polypeptide
A polypeptide is an organic polymer composed of amino acid residues, typically of less than 50 amino acids in length.
polypeptide
sio:PoorQuality
poor quality
sio:Population
A population is all the organisms that both belong to the same group or species and live in the same geographical area.
population
sio:Position
A measurement of a spatial location relative to a frame of reference or other objects.
position
sio:PositionalIdentifier
A positional description is a description of location using some system or frame of reference.
positional identifier
sio:PositionalRole
A positional role is an abstract role which holds by comparing position to another object of reference.
positional role
sio:PositionallyOrientedLine
A positionally oriented line is a line that is positioned against some axis of reference.
positionally oriented line
sio:Positive
positive is an assertional qualifier that expresses the validity or truth of a basic assertion.
positive
sio:PositiveCharge
A positive charge is a charge where the value is positive.
positive charge
sio:PositiveEmotion
A positive emotion is an emotion that feels good.
positive emotion
sio:PositiveNucleicAcidStrand
forward strand
The positive nucleic acid strand refers to the strand that is to be read 5' to 3'.
positive nucleic acid strand
sio:Post-translationalModification
a post-translational modification is a part of a protein that was added, removed, or modified as a result of a chemical reaction after synthesis.
post-translational modification
sio:PostalCode
A postal code is a geographic coordinate composed of a series of letters and/or digits appended to a postal address for the purpose of sorting mail.
postal code
sio:PotassiumAtom
potassium atom
CHEBI:26216
sio:PraseodymiumAtom
praseodymium atom
CHEBI:49828
sio:Pre-mRNA
Precursor mRNA (pre-mRNA) is a single strand of messenger ribonucleic acid (mRNA) that is synthesized from a DNA template throught transcription.
pre-mRNA
sio:Predicted
predicted is the quality of an entity that is thought to exist, as evidenced by some rational procedure.
predicted
sio:PredictedGene
A predicted gene is a gene that was identified through computational method but has not been experimentally validated.
predicted gene
sio:Predicting
predicting is the process of formulating a proposition about a state of affairs which might be realized in the future.
predicting
sio:PreferredName
A preferred name is the name that is generally used by some organization.
preferred name
sio:Premise
A premise is a proposition of an argument from which the conclusion is drawn.
premise
sio:Pride
pride is an emotion of satisfaction of attachment toward one's own or another's choices and actions, or toward a whole group of people, and is a product of praise, independent self-reflection, or a fulfilled feeling of belonging.
pride
sio:PrimaryActiveTransport
primary active transport, also called direct active transport, directly uses energy to transport molecules across a membrane.
primary active transport
sio:PrimaryCategoryAxis
A primary category axis is a category axis that either defines the sole value range or holds the larger set of categorical values specified by the secondary category axis.
primary category axis
The category axis that corresponds to years in Graph 1 of
http://tinyurl.com/opwnvm
null
sio:PrimaryDatabaseKey
A primary database key is a database key that identifies every row of a table.
primary database key
sio:PrimaryGraphTitle
A primary graph title is a primary title that describes a statistical graph.
primary graph title
"Total value of permits increased slightly in December" in Graph 1 of http://tinyurl.com/opwnvm
sio:PrimaryStructureDescriptor
A primary structure descriptor describes a biomolecular object in terms of a 1D or 2D topology.
primary structure descriptor
sio:PrimaryTitle
A primary title is a title that should be first used in describing some entity.
primary title
sio:Primer
A primer is a nucleic acid that enables the synthesis of a complement strand of DNA by binding to it and acting as a point of transcription initiation.
primer
sio:ProbabilityMeasure
A probability measure is quantity of how likely it is that some event will occur.
probability measure
0.0
1.0
sio:ProbabilityValue
p-value
A p-value or probability value is the probability of obtaining a test statistic at least as extreme as the one that was actually observed, assuming that the null hypothesis is true
probability value
sio:Procedure
A procedure is a process that attempts to achieve one or more objectives by following an established set of actions.
Procedure
procedure
sio:Process
A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists.
core
process+
process
sio:ProcessDown-regulation
negative regulation
process down-regulation is a process that decreases the frequency, rate or extent of one or more processes in relation to a reference state.
process down-regulation
sio:ProcessMaintenance
The process of maintaining some the frequency, rate or extent of another process.
process maintenance
sio:ProcessModel
A process model is a representation of some process.
process model
sio:ProcessNumber
process number is a number associated with a process that denotes its ordinal position in a set of processes.
process number
sio:ProcessQuality
A process quality is quality that is associated with a process.
process quality
sio:ProcessStatus
process status is a process quality that describes the state of a process.
process status
sio:ProcessUp-regulation
positive regulation
process up-regulation is a process that increases the frequency, rate or extent of one or more processes in relation to a reference state.
process up-regulation
sio:ProcessualRole
A processual role is a role that can only be realized in a process.
processual role
sio:Product
product
sio:ProductRole
The role of a chemical entity present at the end of a chemical reaction.
product role
sio:Professor
A professor is an individual that is a scholarly teacher.
professor
sio:ProfessorRole
A professor role is the role of an individual that is involved in teaching of students (undergraduate and/or graduate) at a post-secondary academic institution.
professor role
sio:Prognosis
A prognosis is a proposition about the likely course of a disease, the chance of recovery or recurrence.
prognosis
sio:PromethiumAtom
promethium atom
CHEBI:33373
sio:Proposition
A proposition is a sentence expressing something true or false.
proposition
sio:ProstheticGroupRole
A coenzyme role of a chemical entity that is covalently bonded to the enzyme.
prosthetic group role
sio:ProtactiniumAtom
protactinium atom
CHEBI:33386
sio:Protein
A protein is an organic polymer that is composed of one or more linear polymers of amino acids.
CHEBI:36080
protein
sio:ProteinCodingGene
A gene that contains an open reading frame which codes for a protein.
http://purl.obolibrary.org/obo/SO_0001217
protein coding gene
sio:ProteinCodingSequence
A protein coding sequence (CDS) is the region of DNA that is translated to form proteins. The CDS refers to those nucleotides (concatenated exons) that can be divided into codons which are actually translated into amino acids by the ribosomal translation machinery.
CDS
coding sequence
protein coding sequence
2
sio:ProteinComplex
A protein complex is a molecular complex composed of at least two polypeptide chains.
protein complex
sio:ProteinDomain
A protein domain is a part of a protein that maintains its structure and function independently of the rest of the protein.
protein domain
sio:ProteinExpressionValue
A protein expression value is a quantity obtained from a protein expression experiment.
protein expression value
sio:ProteinFamily
a protein family is a collection of proteins that share a common evolutionary origin, reflected by their related function and similarity in composition or structure.
protein family
sio:ProteinMediatedRegulationOfTranslation
A process mediated by a protein that modulates the frequency, rate or extent of translation.
protein mediated regulation of translation
sio:ProteinSequence
amino acid sequence
polypeptide sequence
A protein acid sequence is the character representation of the molecular structure of a protein.
protein sequence
sio:Province
A province is a territorial unit, almost always an administrative division, within a country or state.
province
sio:Pseudogene
A pseudo gene is a region of a nucleic acid that either cannot be transcribed, or its RNA transcript cannot be translated.
http://purl.obolibrary.org/obo/SO_0000336
pseudogene
sio:Publication
A publication is a document that has been made available by a publisher.
Publication
publication
sio:PublisherRole
A publisher role is the role of an individual that prepares and issues creative works.
Publisher
publisher role
sio:PublishingRole
A publishing role is the role of an individual that is involved in the preparation and issue of creative works for consumption by a wider audience.
publishing role
sio:Purpose
purpose is the reason for which something is done or created or for which something exists.
purpose
sio:Quadrilateral
A quadrilateral is a polygon with composed of four points and four line segments, in which each point is fully connected to two other points.
quadrilateral
sio:Quality
A quality is an attribute that is intrinsically associated with its bearer (or its parts), but whose presence/absence and observed/measured value may vary.
core
quality
sio:QualityDescriptor
quality descriptor
sio:Quantile
A quantile is a quantity that divides the range of a probability distribution into continuous intervals with equal probabilities, or dividing the observations in a sample in the same way.
quantile
sio:Quantity
A quantity is an informational entity that gives the magnitude of a property.
Amount
quantity
sio:QuantityModifier
quantity modifier
sio:QuaternaryStructure
A quaternary structure descriptor describes topological patterns in a multi-unit biopolymer complex.
quaternary structure
sio:Question
A question is a linguistic expression used to make a request for information.
question
sio:Quote
A quote is a excerpt that is attributed to a particular source.
quote
sio:RDFSOntology
An RDFS ontology is an ontology that conforms to the syntax and semantics of the Resource Description Framework Schema (RDFS).
RDFS ontology
sio:RESTWebService
a REST web service is a web service that provides functionality according to the Representational State Transfer (REST) specification.
REST web service
http://en.wikipedia.org/wiki/REST
sio:RNATranscript
An RNA transcript is an RNA molecule that is produced from transcription of a nucleic acid template.
RNA transcript
sio:RNATranscriptComponent
An RNA transcript component is a region of an RNA transcript.
RNA transcript component
sio:Race
race is a characteristic of an individual by heritable phenotypic characteristics, geographic ancestry, physical appearance, ethnicity, and social status.
race
sio:Radar
A radar is an object-detection system which uses radio waves to determine the range, altitude, direction, or speed of objects.
radar
sio:RadioReceiver
A radio receiver is a communication device that receives its input from an antenna, uses electronic filters to separate a wanted radio signal from all other signals picked up by this antenna, amplifies it to a level suitable for further processing, and finally converts through demodulation and decoding the signal into a form usable for the consumer, such as sound, pictures, digital data, measurement values, navigational positions.
radio receiver
sio:RadiumAtom
radium atom
CHEBI:33325
sio:RadonAtom
radon atom
CHEBI:33314
sio:Rage
Rage is a feeling of intense anger that is associated with the Fight-or-flight response.
rage
sio:RankNonzeroTensor
a rank nonzero tensor is a tensor with a rank greater than zero.
rank nonzero tensor
sio:Rat
A rat is a medium-sized, long-tailed rodent of the superfamily Muroidea.
rat
sio:RateOfChange
The amount of change accumulated per unit time.
rate of change
sio:Ratio
A ratio is a relationship between two numbers of the same kind expressed arithmetically as a dimensionless quotient of the two which explicitly indicates how many times the first number contains the second.
Fraction
ratio
sio:Ray
A ray is a line which that is bounded by a startpoint and extends outwards infinitely along one dimension.
ray
sio:ReactantRole
The role of a chemical entity present at the beginning of a chemical reaction.
reactant role
sio:Reagent
A reagent is a substance that is added to a system in order to bring about a chemical reaction, or added to see if a reaction occurs.
reagent
sio:ReagentRole
A role of a chemical substance that participates in a chemical reaction as part of some scientific investigation.
reagent role
sio:Real
real is the quality of an entity that exists in real space and time.
real
sio:RealizableEntity
A realizable entity is an attribute that is exhibited under some condition and is realized in some process.
core
realizable entity
sio:Reason
A reason is a justification that specifies the motive for an action or a determination.
reason
sio:Reasoning
reasoning is the agentive process of using knowledge to evaluate the truth value of a proposition.
reasoning
sio:Receptor
A receptor molecule is a molecule that has the capability to bind to a signal and propogate a response to that signal.
receptor
sio:Recipe
A recipe is a set of instructions that describe how to prepare or make something.
recipe
sio:Record
A record is a document containing a collection of statements about some entity.
record
sio:RecordIdentifier
A record identifier is an identifier for a database entry.
record identifier
sio:Rectangle
A rectangle is a quadrilateral in which one pair of line segments are parallel and the other pair are perpendicular to the first pair.
rectangle
sio:RedoxReaction
A redox reaction is a chemical reaction in which there is a net movement of electrons from one reactant to another.
redox reaction
sio:Reference
A reference is a textual entity that describes a single source used in the preparation or development of the work.
reference
sio:ReferencingCell
A referenceing cell is a cell of a cellular automata that refers to another cell.
referencing cell
sio:ReferentCell
A referent cell is a cell that is the referent of some function or pointer.
referent cell
sio:Regret
regret is a feeling of sadness, repentance, or disappointment over something that has happened or been done.
regret
sio:Regulating
regulation
regulating is a process that modulates the attributes of an object or process.
regulating
sio:RegulationOfBiochemicalProcess
regulation of biochemical process is a process that changes the frequency, rate or extent of a target biochemical process.
regulation of biochemical process
sio:RegulationOfCapability
regulation of capability is the regulation of the ability of one party by another.
regulation of capability
sio:RegulationOfCatalyticCapability
the regulation of the enzymatic activity.
regulation of catalytic capability
sio:RegulationOfMolecularDegradation
A process that modulates the frequency, rate or extent of process involved in the destruction of a molecule.
regulation of molecular degradation
sio:RegulationOfMolecularProduction
A process that modulates the frequency, rate or extent of process involved in the production of a molecule.
regulation of molecular production
sio:RegulationOfMolecularQuantity
A process that modulates the frequency, rate or extent of process involved in the creation or destruction of a molecule.
regulation of molecular quantity
sio:RegulationOfObjectConsumption
A process that modulates the frequency, rate or extent of process involved in the consumption of an object.
regulation of object consumption
sio:RegulationOfObjectProduction
regulation of a participant quantity is the regulation of a process in which the quantity of a selected participant is increased.
regulation of object production
sio:RegulationOfObjectQuantity
regulation of a participant quantity is the regulation of a process in which the quantity of its partcipants is changed.
regulation of object quantity
sio:RegulationOfProcess
regulation of a process is a process that modulates the duration, frequency, spatial extent of a target process.
regulation of process
sio:RegulationOfProcessDuration
regulation of a process duration is a process that modulates the duration of another process relative to some reference process.
regulation of process duration
sio:RegulationOfProcessFrequency
regulation of a process duration is a process that modulates the frequency of another process relative to some reference process.
regulation of process frequency
sio:RegulationOfProcessSpatialExtent
regulation of a process spatial extent is a process that modulates the spatial extent of another process relative to some reference process.
regulation of process spatial extent
heating the solution causes greater diffusion of a chemical.
sio:RegulationOfTranscription
A process that modulates the frequency, rate or extent of transcription.
regulation of transcription
sio:RegulationOfTranslation
A process that modulates the frequency, rate or extent of translation.
regulation of translation
sio:RegulatorRole
The role of a chemical entity that modifies the rate of reaction.
regulator role
sio:RegulatoryAuthority
A regulatory authority is an organization responsible for exercising regulatory or supervisory capacity in some area of human activity.
regulatory authority
sio:RegulatoryPathway
A regulatory pathway is a series of biochemical reactions that lead to the increase or decrease of activity of participating molecular components.
regulatory pathway
sio:Remorse
remorse is an emotion of personal regret felt by a person after he or she has committed an act which they deem to be shameful, hurtful, or violent.
remorse
sio:ReplicaQuality
replica quality is the quality of an object that is an exact copy of another object.
replica quality
sio:Replicate
a replicate is an object that is a facsimile, reproduction, or copy of another item.
replicate
sio:ReplicateRole
a replicate role is a comparative role that holds when one item is a reproduction, facsimile, or a copy of another.
replicate role
sio:Report
A report is a textual document made that present focused, salient content to a specific audience.
report
sio:Representation
A representation is a entity that in some way represents another entity (or attribute thereof).
representation
sio:Reproducing
reproducing is a process characterized by creation of an entity that is similar or exactly the same as the template from which it is derived.
reproducing
sio:Resentment
resentment is disgust directed toward a higher status individual.
resentment
sio:ResultsSection
The results section is a document section describing the main findings of the study.
results section
sio:Reviewed
reviewed is the quality of a textual entity that has been examined and commented on by another party.
reviewed
sio:RevisionNumber
A revision number is a version of a software in which bugs have been fixed from a prior version.
revision number
sio:RheniumAtom
rhenium atom
CHEBI:49882
sio:RhodiumAtom
rhodium atom
CHEBI:33359
2
sio:RibonucleicAcid
A ribonucleic acid is an organic polymer composed of a sequence of ribonucleotide residues.
ribonucleic acid
sio:RibonucleicAcidSequence
RNA sequence
A ribonucleic acid sequence is a symbolic representation of the sequence of ribonucleic acid residues in a ribonucleic acid.
ribonucleic acid sequence
sio:RibonucleotideResidue
A ribonucleotide residue is a part of a molecule that derives from a ribonucleotide.
ribonucleotide residue
sio:RibosomalRNAGene
rRNA gene
A ribosomal RNA gene is a gene that codes for a ribosomal RNA molecule.
http://purl.obolibrary.org/obo/SO_0001637
ribosomal RNA gene
sio:Right-handedHelical
right-handed helical quality is the quality in which a clockwise screwing motion moves the helix away from the observed along the line of sight along the helix's axis.
right-handed helical
sio:RightClosedInterval
a right closed interval is an interval in which there is a real number that is larger than all of its elements.
right closed interval
sio:RightOpenInterval
a right open interval is an interval in which there is no element that is greater than all other elements.
right open interval
sio:RightValueAxis
A right value axis is a value axis that is spatially positioned to the right of the plot area.
right value axis
sio:Rigid
rigid is the quality of maintaining structural integrity (and not bending) under pressure.
rigid
3
sio:Ring
A ring is a submolecule with a circular topology.
ring
sio:RnaGene
A gene that is located on RNA.
rna gene
sio:RnaMediatedRegulationOfTranslation
A process mediated by rna that modulates the frequency, rate or extent of translation.
rna mediated regulation of translation
sio:RoentgeniumAtom
roentgenium atom
CHEBI:33368
sio:Role
A role is a realizable entity that describes behaviours, rights and obligations of an entity in some particular circumstance.
core
role
sio:Rotation
Rotation
sio:Row
A row represents a single, implicitly structured data item in a table.
row
sio:RubidiumAtom
rubidium atom
CHEBI:33322
sio:RutheniumAtom
ruthenium atom
CHEBI:30682
sio:RutherfordiumAtom
rutherfordium atom
CHEBI:33346
sio:SADISemanticWebService
a SADI semantic web service is a semantic web service that follows the SADI specification
sadi
SADI semantic web service
http://en.wikipedia.org/wiki/SADI
sio:SADIWebServiceInvocation
A SADI web service invocation is the excution of a SADI web service.
sadi
SADI web service invocation
sio:SOAPWebService
a SOAP web service is a web service that implements Simple Object Access Protocol (SOAP).
SOAP web service
http://en.wikipedia.org/wiki/SOAP
sio:Sadness
sad
unhappiness
unhappy
sadness is emotional pain associated with, or characterized by feelings of disadvantage, loss, despair, helplessness, sorrow, and rage.
sadness
sio:SamariumAtom
samarium atom
CHEBI:33374
sio:Sample
A sample is a limited quantity of something (e.g. an individual or set of individuals from a population, or a portion of a substance) to be used for testing, analysis, inspection, investigation, demonstration, or trial use.
sample
sio:SampleQuality
sample quality is the quality of an object that is drawn from a larger population.
sample quality
sio:Sampling
sampling is the act of obtaining a sample, whether through selection, collection or preparation.
sampling
sio:Satisfaction
contentment
pleasure
satisfaction is an emotion of fulfillment of one's wishes, expectations, or needs, or the pleasure derived from this.
satisfaction is the emotion of fulfillling one's wishes, expectations, or needs.
satisfaction
sio:SatisfactionQualifier
satisfaction qualifier
sio:SatisfiedQualifier
satisfied qualifier
sio:Scalar
rank 0 tensor
a scalar is a rank 0 tensor and is an element of a field that is used to define a vector space.
scalar
sio:ScaledValueAxis
A scaled value axis is a value axis in which the value range was subject to a mathematic transformation.
scaled value axis
sio:ScandiumAtom
scandium atom
CHEBI:33330
sio:Scatterplot
scatter chart
scatter diagram
scatter graph
A scatterplot is a statistical graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.
scatterplot
sio:ScientificData
scientific data is data obtained from some scientific procedure.
scientific data
sio:ScientificName
A scientific name is a name given through scientific nomenclature.
scientific name
sio:SeaborgiumAtom
seaborgium atom
CHEBI:33351
sio:Second
A second (symbol: s) is the base unit of time in the International System of Units (SI) and is the second division of the hour by sixty, the first division by 60 being the minute.
second
sio:SecondMessenger
A second messenger is a molecule that relay signals from receptors on the cell surface to target molecules inside the cell, in the cytoplasm or nucleus.
second messenger
sio:SecondaryActiveTransport
secondary active transport or co-transport uses electrochemical potential difference created by pumping ions out of the cell to transport molecules across a membrane.
secondary active transport
sio:SecondaryCategoryAxis
A secondary category axis is a category axis that defines a finer granular part (or subset) of the value range of the primary category axis.
secondary category axis
The category axis that corresponds to months in Graph 1 of
http://tinyurl.com/opwnvm
sio:SecondaryGraphTitle
A secondary graph title is a secondary title that describes a statistical graph.
secondary graph title
sio:SecondaryStructureDescriptor
A secondary structure descriptor describes local topological patterns in a biopolymer.
secondary structure descriptor
sio:SecondaryTitle
subtitle, alternative title
A secondary title is a title of lesser importance that should be used after the first title in describing some entity.
secondary title
sio:SecretaryRole
A secretary role is the role of an individual that performs administrative tasks to support one or more individuals of the same organization.
secretary role
sio:SeleniumAtom
selenium atom
CHEBI:27568
sio:SemanticWebService
a semantic web service is a web service that provides a formal, machine understanble description of its functionality.
semantic web service
sio:Sentence
A sentence is a grammatical unit consisting of one or more words that bear minimal syntactic relation to the words that precede or follow it.
sentence
sio:Sequence
ordered list
A sequence is an ordered list of entities. Like a set, it contains members (also called elements, or terms).
sequence
For example, (M, A, R, Y) is a sequence of letters that differs from (A, R, M, Y), as the ordering matters, and (1, 1, 2, 3, 5, 8), which contains the number 1 at two different positions, is a valid sequence.
sio:SequenceAlignment
A sequence alignment is the character-based alignment of sequences using some method.
sequence alignment
sio:SequenceAssembly
A sequence assembly is a sequence that is produced as by the alignment of two or more sequences.
sequence assembly
sio:SequenceElementPosition
A sequence element position is the position of an element of a linear sequence.
sequence element position
sio:SequenceEndPosition
A sequence end position is the position of the last character in a sequence of characters relative to some linear frame of reference.
sequence end position
sio:SequenceMotif
A sequence motif is a pattern of nucleotides in a DNA sequence or amino acids in a protein.
sequence motif
sio:SequenceProfile
A sequence profile is provides the preference for a character at each position of an abstracted sequence.
sequence profile
sio:SequenceStartPosition
A sequence start position is the start position for a sequence of characters.
sequence start position
sio:SequenceVariantRole
A sequence variant role is a comparative role in which the composition of characters in a sequence differs when compared to another entity of similar type.
sequence variant role
sio:SequenceVariationNotation
sequence variation notation
sio:Set
A set is a collection of entities, for which there may be zero members.
set
sio:SetItem
set item is an item in a set.
set item
sio:Severe
severe is a qualitative intensity value that is more intense than strong, but less intense than fatal.
severe
sio:Shame
shame is the emotion borne from feeling responsible for the commission of an offense.
shame
sio:Shape
shape is the quality of a bearer that relates to its spatial extent.
shape
sio:Shock
shock is an emotion of sudden upset or surprise.
shock
sio:Shyness
shyness is an emotion of apprehension, lack of comfort, or awkwardness experienced when in proximity to, approaching, or being approached by other individuals, especially in new situations or with unfamiliar individuals.
shyness
sio:Sick
sick is the status of a living organism that is behaving at a sub-optimal level.
sick
sio:SignLanguage
A sign language (also signed language) is a language that involves manual communication and body language to convey meaning. This can involve simultaneously combining hand shapes, orientation and movement of the hands, arms or body, and facial expressions to fluidly express a speaker's thoughts.
sign language
sio:Signal
A signal is an object that initiates a sequence of events.
signal
sio:SignalTransducer
A signal transducer is a molecule that responds to and amplifies a signal in a signalling system.
signal transducer
sio:SiliconAtom
silicon atom
CHEBI:27573
sio:SilverAtom
silver atom
CHEBI:30512
1
sio:SingleArrowedLineSegment
A single arrowed line is directed line in which the endpoint is tangentially part of a triangle that bisects the line.
single arrowed line segment
sio:SingleBond
A single bond is a covalent bond between a pair of atoms in which one pair of electrons are shared.
single bond
sio:SingleDisplacementReaction
A single displacement reaction where one atom is transferred out of one molecule and into another.
single displacement reaction
sio:SingleNucleotidePolymorphism
SNP
SNV
single nucleotide variation
a single nucleotide variation (SNV) is a nucleotide residue that is a variant compared to some reference nucleic acid sequence.
single nucleotide polymorphism
sio:Site
A site is a spatial region bounded (in part or in whole) by material entities and may be occupied by material entities.
site
A nostril; the interior of the heart valve; the interior of a bottle.
sio:Slide
A slide is an visual representation meant to communicate some information.
slide
sio:Slideshow
A slideshow is a visual presentation of information contained within a collection of slides.
slideshow
sio:Slope
A slope or gradient of a line describes its steepness, incline, or grade. A higher slope value indicates a steeper incline. Slope is normally described by the ratio of the "rise" divided by the "run" between two points on a line.
slope
sio:SmallCytoplasmicRNAscRNA
scRNA
A small cytoplasmic RNA (scRNA) molecule is a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins.
small cytoplasmic RNA (scRNA)
sio:SmallCytoplasmicRNAscRNAGene
A small cytoplasmic RNA (scRNA) gene is a gene that encodes a small (7S; 129 nucleotides) RNA molecule found in the cytosol and rough endoplasmic reticulum that are normally associated with proteins that are involved in specific selection and transport of other proteins.
http://purl.obolibrary.org/obo/SO_0001266
small cytoplasmic RNA (scRNA) gene
sio:SmallNuclearRNAsnRNA
snRNA
A small nuclear RNA (snRNA) is a small RNA molecule that is located in the nucleus of a cell.
small nuclear RNA (snRNA)
sio:SmallNuclearRNAsnRNAGene
A small nuclear RNA (snRNA) gene is a gene that encodes a small niuclear RNA molecule.
http://purl.obolibrary.org/obo/SO_0001268
small nuclear RNA (snRNA) gene
sio:SmallNucleolarRNAsnoRNA
snoRNA
A small nucleolar RNA (snoRNA) is a small RNA that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins.
small nucleolar RNA (snoRNA)
sio:SmallNucleolarRNAsnoRNAGene
A small nucleolar RNA (snoRNA) gene is a gene that encodes a small RNA that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins.
http://purl.obolibrary.org/obo/SO_0001267
small nucleolar RNA (snoRNA) gene
sio:SocialEntity
A social entity pertains to the interaction among individuals and groups.
social entity
sio:SocialRelation
A social relation is a social entity that describes a relationship between two or more individuals or groups.
social relation
sio:SocialRole
A social role is a role that is ascribed to individuals in a community.
social role
sio:SocialStructure
A social structure is a social entity which consists of relationships between two or more entities.
social structure
sio:SodiumAtom
sodium atom
CHEBI:26708
sio:SoftwareApplication
A software application is software that can be directly executed by some processing unit.
software application
sio:SoftwareEntity
A software entity is a computational entity that can be interpreted by or directly executed by a processing unit.
software entity
sio:SoftwareInterpreter
A software interpreter is a software application that executes some specified input software.
software interpreter
sio:SoftwareLibrary
A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application.
software library
sio:SoftwareMethod
A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task.
software method
sio:SoftwareModule
A software module is software composed of a collection of software methods.
software module
sio:SoftwareProcessIdentifier
A software process identifier is an identifier for a software process in some operating system.
software process identifier
sio:SoftwareScript
A software script is software whose instructions can be executed using a software interpreter.
software script
sio:SoftwareVersionLabel
A software version label is a version label for a piece of software.
software version label
major.minor[.build[.revision]]
sio:SofwareExecution
software execution is the process of executing software on a computing device.
sofware execution
sio:SolidStateHardDrive
A solid-state drive (SSD) is a data storage device that uses solid-state memory to store persistent data.
solid state hard drive
sio:Solute
A solute is a substance that becomes dissolved in a solvent.
solute
sio:Solvent
A solvent is a substance that can dissolve other substances (solutes).
solvent
sio:SomeOfTheTime
some of the time
some refers to in the minority of occasions
some of the time
sio:Sorrow
sorrow is the emotion that is characterized by a long term state of intense sadness, distress and a degree of resignation (not accepting).
sorrow
sio:SoundArgument
A sound argument is a valid argument with true premises.
sound argument
sio:SoundWave
A sound wave is a mechanical wave that is an oscillation of pressure transmitted through a solid, liquid, or gas, composed of frequencies within the range of hearing.
sound wave
sio:SpatialBoundary
A spatial boundary is the closure minus the interior of a subset of a topological space.
spatial boundary
sio:SpatialQuantity
physical dimensional quantity
A spatial quantity is a quantity obtained from measuring the spatial extent of an entity
spatial quantity
sio:SpatialRegion
region
A spatial region is an object contained in some region of space.
spatial region
The airspace above Ottawa airport; the band around the northern hemisphere between 50 degrees N and 60 degrees N; the spatial region occupied by a bottle.
sio:SpatialSpecification
A specification for spatial location is an effective specification towards representation spatial position or spatial data.
spatial specification
sio:SpecializedMaterialEntity
A specialized material entity is a material entity that is defined by having some quality, role or capability.
specialized material entity
sio:SpecializedObject
specialized object
sio:SpecificGravity
Specific gravity is the ratio of the density of a substance to the density of a reference substance; equivalently, it is the ratio of the mass of a substance to the mass of a reference substance for the same given volume.
specific gravity
sio:Specification
A specification is a description of the essential technical attributes/requirements for an object or procedure, and may be used to determine that the object / procedure meets its requirements/attributes.
specification
sio:Specimen
A specimen is a portion of material for use in testing, examination, or study.
specimen
sio:Speculation
speculation is an opinion based on incomplete evidence.
speculation
sio:Speech
speech is the expression of thoughts and feelings by sound.
speech
sio:Speed
Speed is the rate of change of an object's position.
speed
sio:SphericalCoordinateSystem
A spherical coordinate system is a coordinate system for three-dimensional space where the position of a point is specified by three numbers: the radial distance of that point from a fixed origin, its polar angle measured from a fixed zenith direction, and the azimuth angle of its orthogonal projection on a reference plane that passes through the origin and is orthogonal to the zenith, measured from a fixed reference direction on that plane.
spherical coordinate system
sio:SpliceSite
A splice site is a region required for the excision of an intron and connection to another exon.
splice site
sio:StackGraph
A stack graph is a statistical graph which presents multiple series in which the distance between one series and another indicates the relative contribution to the total for any x-value.
stack graph
sio:StackedBarGraph
A stacked bar graph is a bar graph in which each rectangular bar is partioned by the categorical value of each series of data.
stacked bar graph
Graphs 6,7 in http://tinyurl.com/opwnvm
sio:Standard
A standard is a socially-agreed upon specification.
standard
sio:StandardDeviation
A standard deviation (represented by the symbol σ) is the quantity of variation from the average (mean, or expected value).
standard deviation
sio:StandardOperatingProcedure
A standard operating procedure is a specification approved for use in specific environments.
standard operating procedure
sio:StandardScore
z-value, z-score, normal score, standardadized variable.
A standard score is the (signed) number of standard deviations an observation or datum is above the mean.
standard score
sio:StartCodon
A start codon is the first codon of a messenger RNA (mRNA) transcript translated by a ribosome. The start codon is almost always preceded by an untranslated region 5' UTR.
start codon
sio:StartDate
A start date is a time instant pertaining to the date of the beginning of a process.
start date
sio:StartPoint
A start point is a terminal point which is the first of an ordered
pair of points.
start point
sio:StartPosition
A start position is the proximal position of an object relative to an origin in a linear system.
start position
sio:StartTime
A start time is a time instant pertaining to the time at which a process begins.
start time
sio:State
A state is a set of governing and supportive institutions that have sovereignty over a definite territory and population.
state
sio:Statement
A statement is a proposition that is either (a) a meaningful declarative sentence that is either true or false, or (b) that which a true or false declarative sentence asserts.
statement
sio:StatementOfConsequence
a statement of consequence is a statement concerning the result or effect of an action or condition.
statement of consequence
sio:StationaryPoint
A stationary point is a point that is part of a curve in which the derivative at that point is zero, and hence its value is at least a local maximum or minimum.
stationary point
sio:StatisticalAssociation
A statistical association is any relationship between two measured quantities that renders them statistically dependent.
statistical association
sio:StatisticalGraph
chart
A statistical graph is a figure that displays the relationship among numeric data and/or mathematical functions.
statistical graph
sio:StatisticalGraphLine
A statistical graph line is a line used in a statistical graph to communicate some trend or feature of the embedded data.
statistical graph line
sio:StatusDescriptor
status descriptor is a descriptor for the state of a process or object.
status descriptor
sio:Statute
A statute is a formal written enactment of a legislative authority that governs a state, city or country.
statute
sio:Stereoisomer
A stereoisomer is an isomer in which the atomic connectivity is the same, but differs in its spatial arrangement of atoms.
stereoisomer
sio:StopCodon
A stop codon (or termination codon) is a nucleotide triplet within messenger RNA that signals a termination of translation.
stop codon
sio:Straight
straight is a quality of a bearer that is free of curves, bends, or angles.
straight
PATO:0002180 [for material entities]
sio:Strain
A strain is a genetic variant or kind of microorganism.
strain
sio:Streamgraph
A streamgraph is a multi-line stacked graph that yields the appearance of continuous y-values across the x-axis.
streamgraph
sio:StreetName
A street name is the token given to identify a particular street.
street name
sio:Strong
strong is a qualitative intensity value that is more intense than moderate, but less intense than severe.
strong
sio:StrongChemicalSalt
a strong chemical salt is a chemical salt that is composed of strong electrolytes. Strong chemical salts contain Na,K,NH4 or NO3, CIO4, CH3COO.
strong chemical salt
sio:StrongSubmolecularComponent
A strong submolecular component is a submolecular component that strongly connects submolecular components.
strong submolecular component
sio:StrontiumAtom
strontium atom
CHEBI:33324
sio:StructuralIsomer
A structural isomer is an isomer in which the atoms are joined together in different ways.
structural isomer
sio:StructuralMotif
A structural motif is a pattern in a structure formed by a spatial arrangement of objects (e.g. atoms).
structural motif
sio:StructuralQuality
A structural quality is a quality of an object that describes its structure.
structural quality
sio:Structure
structure is the specification that refers to the composition and arrangement of parts of an object.
structure
sio:Student
A student is an individual who is attends an educational institution.
student
sio:StudentAdvisorRole
A student advisor role is the role of an individual employed at an academic organization that is involved in advising students.
student advisor role
sio:StudentRole
A student role is the role of an individual that is enrolled in courses at an academic institution.
student role
sio:Study
A study is a process that realizes the steps of a study design.
study
sio:StudyDesign
study protocol
A study design is a protocol for the proper execution of a study which normally requires a carefullly crafted research question or hypothesis and at least one variable under observation and observed values for that variable.
study design
sio:StudyGroup
A study group is a group of individuals that are subjects in an observational or intervention study.
study group
sio:StudySubject
A study subject is an individual that is the subject of the study.
study subject
sio:SubcellularEntity
subcellular entity
sio:SubjectRole
A subject role is the role of an individual that is the target of the study.
subject role
sio:SubmolecularEntity
A submolecular entity is a chemical entity that is a part of a molecule.
submolecular entity
sio:Submolecule
A submolecule is any part of a molecule.
submolecule
sio:Substrate
A substrate is a molecule that is consumed in the course of a biochemical reaction.
substrate
sio:SubstrateRole
The role of a chemical entity that is modified in a chemical reaction.
substrate role
sio:Suffering
Suffering is the unpleasant emotion and aversion associated with the perception of harm or threat of harm in an individual.
suffering
sio:Suicidal
suicidal is the emotion of being deeply unhappy or depressed with thoughts of killing one's self.
suicidal
sio:SulfurAtom
sulfur atom
CHEBI:26833
sio:Sum
A sum is the result of adding a set of values together.
sum
sio:Supernatant
A supernatent is a liquid substance that remains after centrifugation.
supernatant
sio:SurfaceArea
The surface area of a is a measure of the total area that the surface of the object occupies.
Surface Area
surface area
sio:SurfaceNormal
A surface normal is a vector that is perpendicular to a flat surface.
surface normal
sio:Surprise
surprise is a brief emotion experienced as the result of an unexpected event.
surprise
sio:Suspended
suspended is the status of a process that is no longer progressing towards completion.
suspended
sio:Syllable
A syllable is a verbal entity of language having one vowel sound, with or without surrounding consonants, forming the whole or a part of a word.
syllable
sio:Symbol
A symbol is a proposition about what an entity represents.
symbol
sio:SymportEnabledSecondaryActiveTransport
symport enabled secondary active transport is a secondary active transfort in which both ion and molecule are transported in the same direction simultaneously.
symport enabled secondary active transport
sio:Syndrome
A syndrome is composed of a set of several clinically recognizable features, signs (observed by someone other than the patient), symptoms (reported by the patient), phenomena or characteristics that often occur together.
syndrome
sio:Synonym
A synonym is a word with the same or very similar meanings.
synonym
sio:SynthesisReaction
A synthesis reaction is an inorganic reaction in which two or more molecules are chemically bonded together to produce a single product.
synthesis reaction
sio:SyntheticQuality
synthetic quality is the quality of a manufactured object that has similar properties as naturally occuring objects.
synthetic quality
sio:T-statistic
A t-statistic is a ratio of the departure of an estimated parameter from its notional value and its standard error.
t-statistic
0.0
sio:T-statisticBasedDecreasedDifferentialGeneExpression
A t-statistic based decreased differential gene expression is a differential gene expression ratio in which the t-statistic is less than zero.
t-statistic based decreased differential gene expression
0.0
sio:T-statisticBasedIncreasedDifferentialGeneExpression
A t-statistic based increased differential gene expression is a differential gene expression ratio in which the t-statistic is greater than zero.
t-statistic based increased differential gene expression
sio:Table
A table is a figure that consists of an ordered arrangement of columns and rows.
table
sio:TableOfContents
The table of contents is a document section that lists all sections (and optionally subsections) in a sequential order along with their page number.
table of contents
sio:TagCloud
word cloud
A tag cloud is a visualization of word frequencies.
tag cloud
sio:TantalumAtom
tantalum atom
CHEBI:33348
sio:Target
target
sio:TechnetiumAtom
technetium atom
CHEBI:33353
sio:TechnicalReport
A technical report is a publication published by a school or other institution, usually numbered within a series.
technical report
sio:Telephone
The telephone is a communications device that transmits and receives sounds, and are minimally composed of a microphone to speak into, a speaker'which reproduces the voice of the other person and a ringer which makes a sound to alert the owner when a call is coming in.
telephone
sio:TelephoneNumber
a telephone number is an identifier used to connect to a physical device capable of transfering voice or data over a network.
telephone number
sio:TelevisionProgram
A television program is a audiovisual media that is produced and broadcast using a television.
television program
sio:TelluriumAtom
tellurium atom
CHEBI:30452
sio:TemporalQualifier
a temporal qualifier is pertains to the frequency of the event of interest.
temporal qualifier
sio:Tensor
a tensor is a n-dimensional array.
tensor
sio:TerbiumAtom
terbium atom
CHEBI:33376
sio:Term
A term is a word or phrase used to denote one or more entities.
term
sio:TermVariant
A term variant is a term that is a variant of another term.
term variant
sio:TerminalPoint
A terminal point is a point that defines the finite extension of a line.
terminal point
sio:Terminology
A terminology is a set of terms used for a specified application.
terminology
sio:Territory
A territory is a non-sovereign geographic region.
territory
sio:Terror
terror is the extreme feeling of fear.
terror
sio:TertiaryStructureDescriptor
A tertiary structure descriptor describes 3D topological patterns in a biopolymer.
tertiary structure descriptor
sio:TestRole
A test role is the role of an individual that is a participant in the study and is the target of the intervention.
test role
sio:TextQuality
text quality is the quality of a textual entity.
text quality
sio:TextSpan
selector
A text span is a subset of contiguous sequence of characters of a textual entity.
text span
sio:TextSpanEndPosition
text span end position is the position (offset) of the last character of a text span in relation the text it is from.
text span end position
sio:TextSpanStartPosition
text span start position is the position (offset) of the first character of a text span in relation the text it is from.
text span start position
sio:TextualChart
A textual chart is a chart containing text.
textual chart
sio:TextualEntity
A textual entity is language entity that is manifested as a sequence of one or more distinct characters.
textual entity
sio:ThalliumAtom
thallium atom
CHEBI:49920
sio:TherapeuticGene-diseaseAssociation
gene-disease association arising from a therapeutic role of the gene/protein
A gene disease association in which the gene is a therapeutic marker for the disease.
therapeutic gene-disease association
sio:ThesisDocument
A thesis document is the written research component of a post-secondary institution that contains a statement supported by arguments.
thesis document
sio:Thickness
thickness is the shortest dimensional extent of a 3D projection of an object.
sio:Thickness
thickness
Out-of-plane thickness for metamaterials with 2D geometry
sio:ThoriumAtom
thorium atom
CHEBI:33385
sio:ThuliumAtom
thulium atom
CHEBI:33380
sio:TickMark
A tick mark is a line segment that is spatially positioned perpendicular to the axis of a statistical graph and indicates the position of a specific numeric value (which may be indicated by an adjacent value label) on a value axis, or is one of a pair of tick marks that delineates the boundary of a categorical value (which may be indicated by an adjacent category label) on the categorical axis.
tick mark
sio:TimeInstant
A time instant is a temporal region which occurs instantaneously, e.g. having no duration.
time instant
at this moment; the moment at which a finger is detached in an industrial accident; the moment at which a child is born; the moment of death
sio:TimeInterval
A time internval is a contiguous temporal region having some duration.
Time
time interval
sio:TimeMeasurement
time measurement is a measurement value of the duration of some interval of time or a particular instant of time (against some frame of reference).
Time intervals are specified as date/datetime ranges.
time measurement
the duration of my life; the duration of a surgical procedure, the moment of death
sio:TinAtom
tin atom
CHEBI:27007
sio:Tissue
A tissue is a mereologically maximal collection of cells that together perform some function.
tissue
sio:TitaniumAtom
titanium atom
CHEBI:33341
sio:Title
A title is a textual entity that summarily describes some entity.
Title
title
sio:ToActivelyInteractWith
to actively interact with is the capability to interact with another entity in a way that requires physical contact.
to actively interact with
sio:ToAddACovalentBond
to add a covalent bond is the capability to covalently modify a chemical entity by adding a covalent bond.
to add a covalent bond
sio:ToAssemble
to assemble is the capability to combine entities together into a larger object that persists in time.
to assemble
sio:ToAssociate
to associate is the capability to physically interact with another object.
to associate
sio:ToBeAMemberOf
to be a member of is the capability to be considered a part of a collection.
to be a member of
sio:ToBeAPartOf
to be a part of is the capability to be assembled into a larger structure that persists in time.
to be a part of
sio:ToBeActivated
to be activated is the capability to be modified in such a way that the conformational change leads to an increase in another capability.
to be activated
sio:ToBeActivelyInteractedWith
to be actively interacted with is the capability to be manipulated by some device or agent.
to be actively interacted with
sio:ToBeCleaved
to be cleaved is the capability to be modified in a way that splits one part of the object from the other.
to be cleaved
sio:ToBeCombined
to be combined is the capability to be modified in a way that the object is merged with another object to form a new object or substance.
to be combined
sio:ToBeCompared
to be compared is the capability of an object to be examined in order to note the similarities or differences among a set of objects.
to be compared
sio:ToBeConformationallyChanged
to be conformationally changed is the capability to be modified in such a way that the object's conformation is changed.
to be conformationally changed
sio:ToBeCovalentlyModified
to be covalently modified is the capability of a chemical entity to have bonds added or removed
to be covalently modified
sio:ToBeElectronicallyModified
to be electronically modified is the capability of a chemical entity to have electrons added or removed.
to be electronically modified
sio:ToBeExamined
to be examined is the capability of an object to be observed in a detailed manner.
to be examined
sio:ToBeInhibited
to be inhibited is the capability to be modified in such a way that the conformational change leads to an decrease in another capability.
to be inhibited
sio:ToBeInteractedWith
to be interacted with is the capability of an object to be target of a physical interaction.
to be interacted with
sio:ToBeModified
to be modified is the capability to be actively interacted with in such a way that it leads to a physical reconfiguration.
to be modified
sio:ToBeObserved
to be observed is the capability of an object to be perceived.
to be observed
sio:ToBePassivelyInteractedWith
to be passively interacted with is the capability of an object to be observed.
to be passively interacted with
sio:ToBeRecorded
to be recorded is the capability of an object to be observed in such a way that information about it can be transcribed in a specified format on some physical medium.
to be recorded
sio:ToBeTranslocated
to be moved
to be translocated is the capability to be physically displaced from one location to another
to be translocated
sio:ToBeTransported
to be transported is the disposition to undergo motion.
to be transported
sio:ToBindTo
to bind to is the capability to physically interact with another object through a set of non-covalent interactions.
to bind to
sio:ToBoil
to boil is the capability to increase the internal kinetic energy of a material such that it changes state from a solid or liquid to a gas.
to boil
sio:ToBreathe
to breathe is the capability to inhale and exhale air into the body during respiration.
to breathe
sio:ToCauseDisease
to cause disease is the capability to materially change a biological object in that it functions abnormally.
to cause disease
sio:ToChangeAppearance
to change appearance is the capability to change the visual attributes of an object.
to change appearance
sio:ToChangeEnergetically
to change energetically is the capability to change the energetic aspects of an object.
to change energetically
sio:ToChangeMaterially
to change appearance is the capability to change the material composition of an object.
to change materially
sio:ToChangeSpatially
to change spatially is the capability to affect the physical movement of some entity.
to change spatially
sio:ToChangeTheActivationEnergy
to change the activation energy is to change the amount of energy required to form or break a chemical bond.
to change the activation energy
sio:ToCharacterize
to characterize is the capability to classify the attributes or features of an entity against a reference classification.
to characterize
sio:ToCleave
to cleave is to split or sever an object along a natural line or grain.
to cleave
sio:ToCombine
to combine is the capability to modify a set of objects in a way that the object is merged with another object to form a new object or substance.
to combine
sio:ToCompare
to compare is the capability to examine in order to note the similarities or differences among a set of objects.
to compare
sio:ToConformationallyActivate
to conformationally activate is to modify the conformation of an entity in such a way that it becomes activated or functional.
to conformationally activate
sio:ToConformationallyInhibit
to conformationally inhibit is to modify the conformation of an entity in such a way that it functionally is reduced or inhibited.
to conformationally inhibit
sio:ToConsume
to consume is the capability to internalize a material entity.
to consume
sio:ToContain
to contain is the capability to bound or constrain a physical entity in some site.
to contain
sio:ToCool
to cool is the capability to decrease the internal kinetic energy of a material.
to cool
http://purl.obolibrary.org/obo/OBI_0000387
sio:ToCovalentlyModify
to covalently modify is to materially change a molecule by adding or removing covalent bonds between atoms.
to covalently modify
sio:ToDecodeInformation
the ability to reverse an encoding operation
to decode information
sio:ToDecreaseTheRateOfFormation
to decrease the rate of formation is to regulate the rate of formation in a manner that decreases this rate relative to a reference process.
to decrease the rate of formation
sio:ToDemagnify
to demagnify is the capability to decrease the appearance of the size of an object.
to demagnify
sio:ToDescribe
to describe is the capabilty to communicate facts about an entity.
to describe
sio:ToDisassemble
to disassemble is to physically separate the parts of an object.
to disassemble
sio:ToDisassociate
to disassociate is to cease or break association with some thing.
to disassociate
sio:ToDistort
to distort is the capability to change the appearance of an entity by some transformation.
to distort
sio:ToEmit
to emit is the capability to release some physical entity (light, pollution, etc).
to emit
sio:ToEncodeInformation
the capability to encode information in a different representation
to encode information
sio:ToExamine
to examine is the capability to make detailed observation.
to examine
sio:ToExcite
to excite is the capability to supply energy to a materila by bombarding it with energetic particles (e.g., photons).
to excite
sio:ToExtract
to extract is the capability to remove certain entities based on selected attribute(s) while allowing other entities to remain.
to extract
sio:ToFilter
to filter is the capability to retain certain entities based on selected attribute(s) while allowing other entities to pass through.
to filter
sio:ToFluoresce
to fluoresce is to emit light as a result of absorbing light or other electromagnetic radiation.
to fluoresce
sio:ToFreeze
to freeze is the capability to decrease the internal kinetic energy of a material such that it changes state from a gas or liquid to a solid.
to freeze
http://purl.obolibrary.org/obo/OBI_0000375
sio:ToGainACovalentBond
to gain a covalent bond is the capability of a chemical entity to have bonds added.
to gain a covalent bond
sio:ToGainAnElectron
to gain an electron is the capability of a chemical entity to receive an electron.
to gain an electron
sio:ToHeat
to heat is a capability to increase the internal kinetic energy of a material.
to heat
sio:ToIdentify
to identify is the capability to determine the identity of something.
to identify
sio:ToImmobilize
to immobilize is the capability to contain an entity in such a way that it may not move in space.
to immobilize
sio:ToIncreaseTheActivationEnergy
to inhibit
to increase the activation energy is to require a larger amount of energy in order to form or break a chemical bond.
to increase the activation energy
sio:ToIncreaseTheRateOfFormation
to increase the rate of formation is to regulate the rate of formation in a manner that increases this rate relative to a reference process.
to increase the rate of formation
sio:ToInfect
to infect is the capability to administer a disease-causing organism into some object.
to infect
sio:ToIngest
to ingest is the capability to take into the body by the mouth for digestion or absorption.
to ingest
sio:ToInject
to inject is the capability to administer a substance into some object through its external barrier.
to inject
sio:ToInteractAndToBeInteractedWith
to interact and to be interacted with is a mutual disposition of interacting objects.
to interact and to be interacted with
sio:ToInteractWith
to interact with is a capabililty that involves another object.
to interact with
sio:ToInvestigate
to investigate is the capability to uncover facts.
to investigate
sio:ToIonize
to ionize is the capability to physically convert an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions.
to ionize
sio:ToLoseACovalentBond
to lose a covalent bond is the capability of a chemical entity to have bonds removed.
to lose a covalent bond
sio:ToLoseAnElectron
to lose an electron is the capability of a chemical entity to lose an electron.
to lose an electron
sio:ToLuminesce
to luminesce is to emit light through cold body radiation
to luminesce
sio:ToMagnify
to magnify is the capability to increase the appearance of the size of an object.
to magnify
sio:ToMaintainInformation
the capability to maintain information such that it can be retrieved in the future.
to maintain information
sio:ToMeasure
to measure is the capability to obtain information about some entity by examining its attributes in relation to some reference metric.
to measure
sio:ToModify
to modify is the capability to change some entity.
to modify
sio:ToModifyConformationOf
to modify conformation of is to affect the spatial arrangement of an entity.
to modify conformation of
sio:ToModifyElectronically
to modify electronically is the capability to change the electronic properties of an object.
to modify electronically
sio:ToModifyOxidationStateOf
to modify the oxidation state of is to change the number of electrons of a molecule, atom or ion.
to modify oxidation state of
sio:ToNegativelyCharge
to negatively charge is the capability to add an electron or negatively charged ion to a chemical entity.
to negatively charge
sio:ToObserve
to observe is the capability to watch attentively.
to observe
sio:ToOxidize
to oxidize is the capability to remove an electron or an increase in oxidation state of a chemical entity.
to oxidize
sio:ToPassivelyInteractWith
to passively interact with is the capability to interact with another entity in a way that does not require physical contact.
to passively interact with
sio:ToPositivelyCharge
to positively charge is the capability to remove an electron or add a positively charged ion to a chemical entity.
to positively charge
sio:ToProduce
to produce is the capability to create new objects
to produce
sio:ToProvide
to provide is the capability to make available some object to another that requires it.
to provide
sio:ToRecord
to record is the capability to detect and transcribe information in a specified format on some physical medium.
to record
http://purl.obolibrary.org/obo/OBI_0000368
sio:ToReduce
to reduce is the capability to add an electron or an decrease in oxidation state of a chemical entity.
to reduce
sio:ToReduceEnergy
to reduce energy is the capability to remove energy from a source.
to reduce energy
sio:ToReduceTheActivationEnergy
to activate
to reduce the activation energy is to require a smaller amount of energy in order to form or break a chemical bond.
to reduce the activation energy
sio:ToRegulate
to modulate
to regulate is to control or maintain the rate or speed of an object or process.
to regulate
sio:ToRegulateTheRateOfFormation
to regulate the rate of formation is to modify the rate at which an object is formed.
to regulate the rate of formation
sio:ToRemoveACovalentBond
to remove a covalent bond is the capability to covalently modify a chemical entity by removing a covalent bond.
to remove a covalent bond
sio:ToRetrieve
the capability to retrieve a (digitial/physical/mental) object from a location.
to retrieve
sio:ToSeparate
to separate is the capability to i) distinguish some entities based on some attribute(s) and ii) subsequently physically displace them.
to separate
sio:ToServeAs
to serve as is the capability to act in a manner corresponding to some role.
to serve as
sio:ToServeAsAHost
to serve as host is the capability to act in a manner that provides hospitality, serves to harbour an organism in or on itself.
to serve as a host
sio:ToServeAsAPrimerForDNASynthesis
to serve as a primer for DNA synthesis is the capability of a short nucleic acid to bind to the 5' end of single strand of DNA template and help initiate DNA replication.
to serve as a primer for DNA synthesis
sio:ToServeAsATemplateForDNASynthesis
to serve as a template for DNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a DNA molecule may be produced.
to serve as a template for DNA synthesis
sio:ToServeAsATemplateForMolecularSynthesis
to serve as a template for molecular synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which another molecule may be produced.
to serve as a template for molecular synthesis
sio:ToServeAsATemplateForProteinSynthesis
to serve as a template for protein synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which a protein may be produced.
to serve as a template for protein synthesis
sio:ToServeAsATemplateForRNASynthesis
to serve as a template for RNA synthesis is the capability of a chemical entity to provide the necessary information or scaffold by which an RNA molecule may be produced.
to serve as a template for RNA synthesis
sio:ToStore
to store is the capability to place an object into a medium in which it can be retrieved in the future.
to store
sio:ToSupplyElectricity
to supply electricity is the capability to transfer electricity from a source to a sink.
to supply electricity
sio:ToSupplyEnergy
to supply energy is the capability to transfer energy from a source to a sink.
to supply energy
sio:ToTestAHypothesis
to test a hypothesis is the capability to evaluate the truth value of a proposition based on gathered evidence.
to test a hypothesis
sio:ToTranslocate
to move
to translocate is the capability to displace oneself from one location to another.
to translocate
sio:ToTransport
to transport is the capability to displace a material from one location to another.
to transport
sio:TopValueAxis
A top value axis is a value axis that is spatially positioned to the top of the plot area.
top value axis
sio:Township
A township is a rural or sub-urban settlement.
township
sio:Toxic
toxic is the quality of a substance imparing the normal functioning of a system.
toxic
sio:ToxicRole
A toxic role is the role of a chemical substance that is poisonous.
toxic role
sio:Toxicity
toxicity is the quality of a chemical substance to cause injury to an organism in a dose dependent manner.
toxicity
sio:ToxinRole
A toxin role is a toxic role of a chemical substance that is poisonous and is produced by an organism.
toxin role
sio:Trans-regulatoryElement
A trans-regulatory element is a DNA sequence associated with the regulation of a gene located outside the genomic region supporting the corresponding structural DNA region of the trans-regulatory element (i.e., a different DNA strand or different chromosome).
trans-regulatory element
sio:Transcription
transcription is the process of creating a complementary RNA copy of a sequence of DNA.
transcription
sio:TransferRNAtRNA
tRNA
A transfer RNA (tRNA) is an RNA molecule that aids in the translation of a messenger RNA (mRNA) to produce a protein product.
transfer RNA (tRNA)
sio:TransferRNAtRNAGene
solube RNA (sRNA) gene
tRNA gene
A transfer RNA (tRNA) gene is a gene that codes for a tRNA used in the translation of a messenger RNA (mRNA) to produce a protein product.
http://purl.obolibrary.org/obo/SO_0001272
transfer RNA (tRNA) gene
sio:Translation
translation is the process of producing a polypeptide from a ribonucleic acid by a ribosome.
translation
sio:Transporting
transporting is a process in which one object physically moves another object from one location to another.
transporting
sio:TreeDiagram
A tree diagram is a hierarchical network diagram in which a root vertex is connected to one or more other vertices through a directed edge, which in turn may be connected to other vertices.
tree diagram
sio:Treemap
A treemap is a chart that fully partitions the area into a set of rectangles whose area represents its relative value.
treemap
sio:TrendLine
A trend line is a line, line segment or ray that is part of a statistical graph which indicates a statistical or visual direction across categorical or value data.
trend line
sio:Triangle
A triangle is a polygon composed of three points and three line segments, in which each point is fully connected to another point along through the line segment.
triangle
sio:TripleBond
A triple bond is a covalent bond between a pair of atoms in which three pairs of electrons are shared.
triple bond
true
sio:True
true is a truth value that indicates that it holds under all possible worlds.
true
sio:TruthValue
truth value is a quality of information that is claimed/verified to be true or false.
truth value
sio:TungstenAtom
tungsten atom
CHEBI:27998
sio:URL
Uniform Resource Locator
A Uniform Resource Locator or Universal Resource Locator (URL) is a specific character string that constitutes a reference to an Internet resource.
URL
URL
A Uniform Resource Locator or Universal Resource Locator (URL) is a specific character string that constitutes a reference to an Internet resource.
https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio/release/sio-release.owl
sio:UncertaintyValue
The uncertainty value (margin of error) of a measurement is a range of values likely to enclose the true value.
uncertainty value
sio:Uncharged
The quality of not having a charge.
uncharged
sio:UndergraduateStudentAdvisorRole
An undergraduate student advisor role is the role of an individual employed at an academic organization that is involved in advising undergraduate students.
undergraduate student advisor role
sio:UnicellularOrganism
A unicellular organism is a organism that is composed of a single cell.
unicellular organism
sio:UnigeneCluster
a unigene cluster is a collection of transcripts (ESTs and mRNAs) that map to a particular genomic region.
cluster of transcripts
unigene cluster
sio:Union
A union is a list of all of the values of an attribute for the entities in the defined set.
union
sio:UniqueCell
A unique cell is a cell that contains a unique value in the cellular automaton.
unique cell
sio:UniqueIdentifier
A unique identifier is an identifier that uniquely identifies some thing.
unique identifier
sio:UnitOfMeasurement
A unit of measurement is a definite magnitude of a physical quantity, defined and adopted by convention and/or by law, that is used as a standard for measurement of the same physical quantity.
unit of measurement
unit of measurement
sio:University
A university is an institution of higher education and research which grants academic degrees in a variety of subjects and provides both undergraduate education and postgraduate education.
university
sio:Unsupported
unsupported is an existence quality in which there is no evidence to support the existence of the entity in any world (real or hypothetical)
unsupported
sio:UnunhexiumAtom
ununhexium atom
sio:UnunoctiumAtom
ununoctium atom
sio:UnunpentiumAtom
ununpentium atom
sio:UnunquadiumAtom
ununquadium atom
sio:UnunseptiumAtom
ununseptium atom
sio:UnutriumAtom
unutrium atom
sio:UraniumAtom
uranium atom
CHEBI:27214
sio:UserAccount
user account allows a user to authenticate to system services and be granted authorization to access them.
user account
sio:ValidArgument
A valid argument is an argument where the truth of the conclusion is a logical consequence of the premises and (consequently) its corresponding conditional is a necessary truth.
valid argument
sio:ValidatedGene
An experimentally validated gene is a gene whose existence has been demonstrated through experimental methods.
validated gene
sio:ValueAxis
A value axis is an axis in which the position along the line is partioned into numeric values.
A value axis holds the properties of having a minimum and a maximum value, and is usually associated with tickmarks that indicate intervals along the axis.
value axis
The value axis that ranges from 3.0 to 7.4 and corresponds to
billions of dollars in Graph 1 of http://tinyurl.com/opwnvm
sio:VanDerWaalsInteraction
van der Waals' interaction is an a weak submolecular interaction between an instantaneous dipole and induced dipole.
van der Waals interaction
sio:VanadiumAtom
vanadium atom
CHEBI:27698
sio:Variable
A variable is a value that may change within the scope of a given problem or set of operations.
variable
sio:VariantRole
A variant role is a comparative role in which the value of an attribute differs when compared to another entity
variant role
sio:Vector
rank 1 tensor
a vector is a rank 1 tensor that is described by n-dimension of scalars.
Vector
vector
sio:VectorLine
A vector line is a line which that is bounded by a startpoint and extends outwards along one dimension.
vector line
0
sio:VectorSpace
a vector space is a set of vectors.
vector space
sio:Velocity
The rate of change of an object's position and the direction of that change
velocity
sio:VennDiagram
A Venn diagram is a chart that illustrates all possible logical relations between a finite collection of sets as overlapping circles.
venn diagram
sio:VerbalLanguage
A verbal language is a language that uses sounds to communicate.
verbal language
sio:VerbalLanguageEntity
A verbal language entity is a language entity that is manifested through sound.
verbal language entity
sio:VersionLabel
A version label is a label for a particular form or variation of an earlier or original type.
version label
sio:VersionedDataset
a versioned dataset is a dataset with a particular release date or release number.
versioned dataset
sio:VersionedRecord
A versioned record is a record for which there exists another variant based that was derived via modification of the facts.
versioned record
sio:VertexNormal
A vertext normal is the normalized average of the surface normals of the faces that contain that vertex.
vertex normal
sio:VerticalBarGraph
A vertical bar graph is a bar graph in which the rectangular bars are vertically oriented in space.
vertical bar graph
Graph 4,5 in http://tinyurl.com/opwnvm
sio:VerticalLine
A vertical line is a line that is positionally oriented perpendicular to the horizon.
vertical line
sio:VeryDissatisfiedQualifier
very dissatisfied qualifier
sio:VeryGoodQuality
very good quality
sio:VeryPoorQuality
very poor quality
sio:Viroid
A viroid is a molecule of RNA that does not code for and is not protected by a protein coat.
viroid
sio:Virtual
virtual is the quality of an entity that exists only in a virtual setting such as a simulation or game environment.
virtual
sio:Virus
A virus is a non-cellular organism that can replicate only inside the living cells of an organism.
virus
sio:VisualLanguageEntity
A visual language entity is a language entity that is manifested within the spectrum of light and can be pereceived and processed by a visual system.
visual language entity
sio:Vocabulary
A vocabulary is a collection of terms.
vocabulary
sio:Volume
volume is the quantity of three-dimensional space enclosed by some closed boundary.
volume
sio:VolumeNumber
volume number is a count of a sequence of periodicals.
Volume
volume number
sio:Vowel
A vowel is a verbal entity of language that is pronounced with an open vocal tract so that there is no build-up of air pressure at any point above the glottis.
vowel
sio:Wave
A wave is a physical entity that travels through space and time, consist of oscillations or vibrations and may be accompanied by the transfer of energy.
wave
sio:Weak
weak is a qualitative intensity value that is more intense than none, but less intense than mild.
weak
sio:WeakChemicalSalt
a weak chemical salt is a chemical salt composed of weak eletrolytes.
weak chemical salt
sio:WeakSubmolecularComponent
A weak submolecular component is a submolecular component that weakly connects submolecular components.
weak submolecular component
sio:WebPage
A web page is a document that is published according to World Wide Web standards.
web page
sio:WebService
A web service is a software application that can be accessed over a network, such as the Internet, and executed on a remote system hosting the requested services.
web service
sio:WebServiceInvocation
A web service invocation involves the execution of a web service.
web service invocation
sio:Website
A website is a collection of documents published on the World Wide Web.
website
sio:Width
width is the shorter dimensional extent perpendicular to a 2D projection of the object.
Width
width
sio:Wonder
wonder is an emotion of perceiving something very rare or unexpected, but not threatening.
wonder
sio:Word
A word is the smallest free form (an item that may be expressed in isolation with semantic or pragmatic content) in a language.
word
sio:WordEndPosition
word end position is the position of the last character in a word as an offset from the first character of the text in which it is found.
word end position
sio:WordStartPosition
The position of the first character in a word as an offset from the first character of the text in which it is found.
word start position
sio:WordTree
A word tree is a chart that links phrases with contexts through a tree-like branching structure.
word tree
sio:WorkPhoneNumber
a work phone number is the number to connect to an phone at a place of work.
work phone number
sio:Workflow
A workflow is an algorithm that is is a depiction of a sequence of operations to achieve one or more objectives.
workflow
sio:Worm
A worm is a non-arthropod invertebrate animal that typically have a long cylindrical tube-like body and no legs.
worm
sio:Worry
worry is the emotion characterized by concer over a real or imaginary issue.
worry
sio:Written
written is the quality of information that is embodied as visual glyphs in some material form.
written
sio:WrittenLanguage
written language is a language that is communicated through a writing system.
written language
sio:X-axis
horizontal axis
An x-axis is a Cartesian coordinate axis that is aligned with the horizon.
In most figures, this axis represents categories, such as months, market segments, or other non-numeric data.
x-axis
The horizontal axis in http://tinyurl.com/opwnvm
sio:XCartesianCoordinate
An x cartesian coordinate is the coordinate of an object onto the x-axis of a cartesian coordinate system.
x cartesian coordinate
sio:XenonAtom
xenon atom
CHEBI:49957
sio:Y-axis
vertical axis
A y-axis is a Cartesian coordinate axis that is spatially oriented perpendicular to the x-axis.
y-axis
sio:YCartesianCoordinate
An y cartesian coordinate is the coordinate of an object onto the y-axis of a cartesian coordinate system.
y cartesian coordinate
sio:Year
A year is a period of time taken by a planet to make one revolution around the sun.
year
sio:YtterbiumAtom
ytterbium atom
CHEBI:33381
sio:YttriumAtom
yttrium atom
CHEBI:33331
sio:Z-axis
A z-axis is a Cartesian coordinate axis that is spatially oriented normal to the plane formed by the x- and y-axes.
z-axis
sio:ZCartesianCoordinate
A z cartesian coordinate is the coordinate of an object onto the z-axis of a cartesian coordinate system.
z cartesian coordinate
sio:ZincAtom
zinc atom
CHEBI:27363
sio:ZirconiumAtom
zirconium atom
CHEBI:33342
sio:Zygosity
zygosity is the quality pertaining to the allelic complement of a biological system at a single locus on the DNA.
zygosity
1
A 1D cartesian point is a point whose position is specified along a single dimension using Cartesian coordinates.
1D cartesian point
A quantity that extends in single dimension.
1D extent quantity
1
1
A 2D cartesian point is a point whose position is specified along two dimensions using Cartesian coordinates.
2D cartesian point
A quantity that extends in two dimensions.
2D extent quantity
1
1
1
A 3D cartesian coordinate is a coordinate that is composed of an x, y and z coordinate.
3D cartesian coordinate
1
1
1
A 3D cartesian point is a point whose position is specified along three dimensions using Cartesian coordinates.
3D cartesian point
A quantity that extends in three dimensions.
3D extent quantity
A 3D structure model is a representation of the spatial arrangement of one or more chemical entities.
3d structure model
The 3' splice site is the terminal region of an exon that is 3' to the intron that is to be excised.
3' splice site
A three prime untranslated region (3'-UTR) is the section of messenger RNA (mRNA) that immediately follows the translation termination codon.
3' untranslated region
The 5' splice site is the terminal region of an exon that is 5' to the intron that is to be excised.
5' splice site
The five prime untranslated region (5' UTR) is a section of messenger RNA (mRNA) and the DNA that codes for it that starts at the +1 position (where transcription begins) and ends one nucleotide before the start codon (usually AUG) of the coding region.
5' untranslated region
An honor's thesis is a thesis prepared as a requirement for an honor's undergraduate degree.
honor's thesis
Implication is a logical operator that holds between a set T of propositions and a proposition B, when every model (or interpretation or valuation) of T is also a model of B.
implies (->)
A Master's thesis is a thesis prepared as a requirement for a Master's degree.
master's thesis
np:Assertion
np:Nanopublication
np:Provenance
np:PublicationInfo
rdf:List
rdf:Seq
rdfs:Resource
owl:Thing
rdfg:Graph
prov:Agent
foaf:Agent
Used to describe any "agent" related to bibliographic items. Such agents can be persons, organizations or groups of any kind.
foaf:Document
foaf:Image
foaf:Organization
Ued to describe an organization related to bibliographic items such as a publishing company, etc.
foaf:Person
Used to describe a Person related to a bibliographic ite such as an author, an editor, etc.
Temperature
The average kinetic energy of all constituents within a materials system
Pressure
Diameter
A materials ontology to support data publication involving nanomaterials and metamaterials.
BIBO
Materialsmine Ontology
Nanopub
SIO
C/m^2
J
Joule per Centimeter
J/cm
Joule per Gram-Celsius
J/gC
Joule per Gram-Kelvin
J/gK
J/K
J/m^3
K
kg/m^3
Kilojoule per Square Meter
kJ/m^2
Kilovolt per Centimeter
kV/cm
Kilovolt per Millimeter
kV/mm
Log Hertz
log(Hz)
m
m^2
m^2/s
m^3/K
m/K
materialsmine:revolutions_per_minute
Square Millimeter per Second
mm^2/s
Millimeters per millimeter
mm/mm
N
nm
Ohm Centimeter
Ω cm
Ohm*m
Pa
Parts per million per degree centigrade
ppm/C
s
S/m
V/m
W/(m*K)
1/Pa
1/s
Per Second
1/s
Rotation per Minute
rpm
Bruce D'Arcus
http://purl.org/ontology/bibo/
http://purl.org/net/darcusb/info#me
Frederick Giasson
http://purl.org/ontology/bibo/
http://fgiasson.com/me/
masters degree in arts
M.A.
stable
masters degree in science
M.S.
stable
PhD degree
PhD degree
stable
Accepted for publication after peer reviewing.
accepted
stable
Document drafted
draft
stable
Document to be published
forthcoming
stable
Legal document
legal
stable
A document that is not peer reviewed
non peer reviewed
stable
The process by which articles are chosen to be included in a refereed journal. An editorial board consisting of experts in the same field as the author review the article and decide if it is authoritative enough for publication.
peer reviewed
stable
Published document
published
stable
Rejected for publication after peer reviewing.
rejected
stable
Unpublished document
unpublished
stable
Megavolt per Meter
MV/m
Radian per Minute
rad/min
Siemens per Centimeter
S/cm
Volt per Centimeter
V/cm
Joule per Gram
J/gm
Kelvin per Minute
K/min
per Kelvin
1/K
Ampere per Square Meter
A/m^2
Celsius
C
Celsius per Minute
C/min
Gigapascal
GPa
Gram per Cubic Centimeter
g/cm^3
Hertz
Hz
Kelvin
K
Kiloelectronvolt
keV
Kilogram per Cubic Meter
kg/m^3
Kilogram per Liter
kg/L
Kilohertz
kHz
Kilopascal
kPa
Kilovolt
kV
Megapascal
MPa
Micrometer
µm
Millimeter
mm
Minute
min
Mole per Cubic Meter
mol/m^3
Nanometer
nm
Ohm Meter
Ω m
Pascal
Pa
Percent
%
Radian per Second
rad/s
Second
s
Siemens per Meter
S/m
Square Meter per Gram
m^2/g
Strain
Watt per Meter-Kelvin
W/mK
Used to link a bibliographic item to one of its contributor: can be an author, an editor, a publisher, etc.
Used to describe a bibliographic resource.
Used to describe the issue date of a bibliographic resource
Used to describe rights related to a bibliographic resource.
Used to describe the title of a bibliographic resource
The Bibliographic Ontology describes
bibliographic things on the semantic Web in RDF. This ontology can be
used as a citation ontology, as a document classification ontology, or
simply as a way to describe any kind of document in RDF. It has been
inspired by many existing document description metadata formats, and
can be used as a common ground for converting other bibliographic data
sources.
The Bibliographic Ontology
http://purl.org/ontology/bibo/1.3/
en
Contributors are those that engage in discussions in the context of SIO (in alphabetical order):
sivaram arabandi
christopher baker
joachim baran
jerven bolleman
matthew brush
alison callahan
leonid chepelev
kevin cohen
melanie courtot
geraint duck
laura furlong
elisa kendall
tatsuya kushida
luke mccarthy
jim mccusker
jose miguel cruz-toledo
chris mungall
robert hoehndorf
simon jupp
jin-dong kim
dana klassen
thomas luetteke
james malone
chris mungall
david osumi-sutherland
tazro ohta
nuria queralt
stephen reed
alexandre riazanov
matthias samwald
robert stevens
mark wilkinson
karin verspoor
natalia villanueva-rosales
Michel Dumontier
http://orcid.org/0000-0003-4727-9435
The semanticscience integrated ontology (SIO) provides a simple, integrated ontology (types, relations) for objects, processes and their attributes.
This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.
website: http://semanticscience.org
email: sio-ontology@googlegroups.com
mailing list: http://groups.google.com/group/sio-ontology
2010-03-29
free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/4.0/].
Semanticscience Integrated Ontology (SIO)
http://www.jbiomedsem.com/content/5/1/14
sio
http://semanticscience.org/resource/
general class inclusion axioms:
'is part of' some 'physical entity' subClassOf 'is located in' some 'physical entity'
role chains:
'has capability' o 'is realized in' -> 'is participant in'
http://sio.semanticscience.org
1.53
sio-subset-labels.owl
sio:Day
A day is a period of 24 hours.
Day
day
dy
sio:Hour
An hour is a period of 60 minutes.
Hour
hour
Hr
sio:Week
A week is a period of 7 consecutive days.
Week
week
wk
2012-10-26
2013-10-23
Used to link an agent to its homepage (which is a web page accessible using a URL).